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Lag0023161 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023161
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:45116877..45117611
RNA-Seq ExpressionLag0023161
SyntenyLag0023161
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032113.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]7.6e-1542.36Show/hide
Query:  SKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNHGYNRTEKEAGPLVYLCPEDFELNNWTVMELPSFVNE-------ISNEIGIESVNDLKYEL
        S N  RFGLGYKPS  D I    ++KEKRLA+LE RE +    +     G +VY CP DFELNNW +++LP+F  +       I N    E V++    L
Subjt:  SKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNHGYNRTEKEAGPLVYLCPEDFELNNWTVMELPSFVNE-------ISNEIGIESVNDLKYEL

Query:  DSPTYDVESDERTSGNEEDLELTPELLRMIEEVKE-LNPLAEAV
        D+  Y +ES+ + S +E+D+ ++ EL+RM+EE  E L P  E V
Subjt:  DSPTYDVESDERTSGNEEDLELTPELLRMIEEVKE-LNPLAEAV

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]5.4e-1336.48Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                                   ++  P VY CP+ FEL+NW+V   
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL
                    IE  ND KYELD+P Y++ESD+     E D E + ELLRM+EE +++
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL

XP_022147181.1 uncharacterized protein LOC111016192 [Momordica charantia]3.4e-2344.38Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                             G     ++ GP VY CP+ FEL+NW+V+EL
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMI-EEVKELNPLAEAVFT
        PSFVN  SN   IE  ND KYELD+P Y++ESDE     E D E + ELLRM+ EE K L P  E   T
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMI-EEVKELNPLAEAVFT

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]4.9e-2243.4Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                                   ++ GP VYLCP+ FEL+NW+V++L
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL
        PSFVN  SN   IE  ND KYELD+P Y +ESDE     E D E + ELLRM+EE +++
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL

XP_022158764.1 uncharacterized protein LOC111025231 [Momordica charantia]1.4e-1352.17Show/hide
Query:  KEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKELNPLAEAVFT
        ++ GP VY  P+ FEL+NW+V+EL SFVN  SN   IE  ND KYELD+P Y++ESDE     E++ E + ELLRM+EE K L P  E   T
Subjt:  KEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKELNPLAEAVFT

TrEMBL top hitse value%identityAlignment
A0A5A7SP40 Retrovirus-related Pol polyprotein from transposon 17.63.7e-1542.36Show/hide
Query:  SKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNHGYNRTEKEAGPLVYLCPEDFELNNWTVMELPSFVNE-------ISNEIGIESVNDLKYEL
        S N  RFGLGYKPS  D I    ++KEKRLA+LE RE +    +     G +VY CP DFELNNW +++LP+F  +       I N    E V++    L
Subjt:  SKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNHGYNRTEKEAGPLVYLCPEDFELNNWTVMELPSFVNE-------ISNEIGIESVNDLKYEL

Query:  DSPTYDVESDERTSGNEEDLELTPELLRMIEEVKE-LNPLAEAV
        D+  Y +ES+ + S +E+D+ ++ EL+RM+EE  E L P  E V
Subjt:  DSPTYDVESDERTSGNEEDLELTPELLRMIEEVKE-LNPLAEAV

A0A6J1CNY7 Ribonuclease H2.6e-1336.48Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                                   ++  P VY CP+ FEL+NW+V   
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL
                    IE  ND KYELD+P Y++ESD+     E D E + ELLRM+EE +++
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL

A0A6J1D099 Ribonuclease H2.4e-2243.4Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                                   ++ GP VYLCP+ FEL+NW+V++L
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL
        PSFVN  SN   IE  ND KYELD+P Y +ESDE     E D E + ELLRM+EE +++
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKEL

A0A6J1D1K4 uncharacterized protein LOC1110161921.6e-2344.38Show/hide
Query:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL
        M+KN K+FGLGYKPS+ D+I+    EK KRL+R EN E ++                             G     ++ GP VY CP+ FEL+NW+V+EL
Subjt:  MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNH-----------------------------GYNRTEKEAGPLVYLCPEDFELNNWTVMEL

Query:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMI-EEVKELNPLAEAVFT
        PSFVN  SN   IE  ND KYELD+P Y++ESDE     E D E + ELLRM+ EE K L P  E   T
Subjt:  PSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMI-EEVKELNPLAEAVFT

A0A6J1E0D0 uncharacterized protein LOC1110252316.9e-1452.17Show/hide
Query:  KEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKELNPLAEAVFT
        ++ GP VY  P+ FEL+NW+V+EL SFVN  SN   IE  ND KYELD+P Y++ESDE     E++ E + ELLRM+EE K L P  E   T
Subjt:  KEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGNEEDLELTPELLRMIEEVKELNPLAEAVFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAAAATATGAAGAGGTTTGGTTTGGGATATAAACCAAGCAAAAAAGATATGATTAAAGCACATAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCG
TGAGCCGAATCATGGCTATAATCGAACAGAAAAAGAAGCTGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCAT
TTGTTAATGAGATATCAAACGAAATTGGGATTGAAAGCGTTAATGATCTTAAATACGAACTTGATTCTCCTACATACGATGTTGAGTCCGATGAGAGAACAAGTGGTAAT
GAGGAAGATCTAGAACTTACTCCTGAATTGTTGAGAATGATTGAAGAAGTGAAGGAATTGAATCCTCTAGCGGAAGCGGTTTTCACCGATCGTGATTTTAATTTCAATTA
A
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAAAATATGAAGAGGTTTGGTTTGGGATATAAACCAAGCAAAAAAGATATGATTAAAGCACATAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCG
TGAGCCGAATCATGGCTATAATCGAACAGAAAAAGAAGCTGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCAT
TTGTTAATGAGATATCAAACGAAATTGGGATTGAAAGCGTTAATGATCTTAAATACGAACTTGATTCTCCTACATACGATGTTGAGTCCGATGAGAGAACAAGTGGTAAT
GAGGAAGATCTAGAACTTACTCCTGAATTGTTGAGAATGATTGAAGAAGTGAAGGAATTGAATCCTCTAGCGGAAGCGGTTTTCACCGATCGTGATTTTAATTTCAATTA
A
Protein sequenceShow/hide protein sequence
MSKNMKRFGLGYKPSKKDMIKAHRQEKEKRLARLENREPNHGYNRTEKEAGPLVYLCPEDFELNNWTVMELPSFVNEISNEIGIESVNDLKYELDSPTYDVESDERTSGN
EEDLELTPELLRMIEEVKELNPLAEAVFTDRDFNFN