; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0023266 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023266
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr7:46628545..46628946
RNA-Seq ExpressionLag0023266
SyntenyLag0023266
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443035.1 hypothetical protein F2P56_035630 [Juglans regia]5.5e-0431.76Show/hide
Query:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
        + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   L++++V +  DSL ++KA+N   +C
Subjt:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
XP_018812812.2 uncharacterized protein LOC108985100 [Juglans regia]5.5e-0431.76Show/hide
Query:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
        + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   L++++V +  DSL ++KA+N   +C
Subjt:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
XP_024178222.1 uncharacterized protein LOC112184181 [Rosa chinensis]9.3e-0438.27Show/hide
Query:  DIVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAIN
        ++ L+ D AF+ +  KGG+G ++R+  G++QAA   A    SSP+ A+++A+  GL L R L    V ++SD L  V+ IN
Subjt:  DIVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAIN
TrEMBL top hitse value%identityAlignment
A0A2I4E092 uncharacterized protein LOC1089851002.6e-0431.76Show/hide
Query:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
        + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   L++++V +  DSL ++KA+N   +C
Subjt:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
A0A2I4ECC6 uncharacterized protein LOC1089882837.7e-0430.59Show/hide
Query:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
        + ++ D AF    RK G G+++RD+ G +Q +  L      S + A+  A+   LCL   +++++V +  DSL ++KA+N   +C
Subjt:  IVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLSDSLNLVKAINQDIQC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCGTTGTGAATGGATCCTTGAATATCTGTCAAATTATTCGACTGCAAATTCAAAGGGTCAGGCATGTGTCCAATCCGAGGAGGAAGTTATCGATATTATATCAAA
GGGTGAAGATATTGTTTTGCACACAGATGTTGCATTCATGGGAAAGTCGCGTAAAGGTGGTATTGGGATTATTATGCGAGATAAGGTTGGTAAGCTTCAGGCGGCTCAAT
CACTGGCGTCTTCAGTTTGCTCGTCTCCTCTAAGGGCGAAAGTAGTCGCAGTTTTGGAAGGGCTTTGTCTGGCTAGAAGCCTAGATGTGCGAAGAGTAACAGTGTTATCT
GACTCTCTAAATCTAGTTAAAGCTATTAATCAGGATATCCAATGTGACTATAGTATTGCATCAACTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCGTTGTGAATGGATCCTTGAATATCTGTCAAATTATTCGACTGCAAATTCAAAGGGTCAGGCATGTGTCCAATCCGAGGAGGAAGTTATCGATATTATATCAAA
GGGTGAAGATATTGTTTTGCACACAGATGTTGCATTCATGGGAAAGTCGCGTAAAGGTGGTATTGGGATTATTATGCGAGATAAGGTTGGTAAGCTTCAGGCGGCTCAAT
CACTGGCGTCTTCAGTTTGCTCGTCTCCTCTAAGGGCGAAAGTAGTCGCAGTTTTGGAAGGGCTTTGTCTGGCTAGAAGCCTAGATGTGCGAAGAGTAACAGTGTTATCT
GACTCTCTAAATCTAGTTAAAGCTATTAATCAGGATATCCAATGTGACTATAGTATTGCATCAACTCTCTAG
Protein sequenceShow/hide protein sequence
MIRCEWILEYLSNYSTANSKGQACVQSEEEVIDIISKGEDIVLHTDVAFMGKSRKGGIGIIMRDKVGKLQAAQSLASSVCSSPLRAKVVAVLEGLCLARSLDVRRVTVLS
DSLNLVKAINQDIQCDYSIASTL