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Lag0023306 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023306
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr7:47024271..47029531
RNA-Seq ExpressionLag0023306
SyntenyLag0023306
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]2.2e-4889.72Show/hide
Query:  CAPMEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKP
        C  MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLMVVCQHVRNTFDKAVLD KLT P
Subjt:  CAPMEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKP

Query:  VEDINIE
        V DINI+
Subjt:  VEDINIE

KAG7036964.1 DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-4890.83Show/hide
Query:  LLCAPMEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLT
        L    MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLM VCQHVRNT DKAVLD KLT
Subjt:  LLCAPMEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLT

Query:  KPVEDINIE
        KPV DINI+
Subjt:  KPVEDINIE

XP_022150895.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]2.2e-4892.31Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNLMVVCQHVRNTFDK+VLDFKLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

XP_022948356.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata]5.0e-4894.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLM VCQHVRNT DKAVLD KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]2.2e-4893.27Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLMVVCQHVRNTFDKAVLD KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein9.2e-4891.35Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSFTDE+KSTFS+ADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLMVVCQHVRNTFDKAVLD KLT PV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

A0A1S3C5G1 DNA-directed RNA polymerases I and III subunit RPAC27.7e-4789.81Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK----
        MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK    
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK----

Query:  PVEDINIE
        P  DINIE
Subjt:  PVEDINIE

A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC21.1e-4892.31Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKD+CQNLMVVCQHVRNTFDK+VLDFKLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC22.4e-4894.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLM VCQHVRNT DKAVLD KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC22.4e-4894.23Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED
        MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD AREVLKDACQNLM VCQHVRNT DKAVLD KLTKPV D
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVED

Query:  INIE
        INI+
Subjt:  INIE

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC21.8e-1643.62Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        M   + TD    TF + +EDHTL NS+RY + ++P V FCGY+  HPS++++N+R+QT G L A E  +     LM VCQHV + F+ ++ D+K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFK

P97304 DNA-directed RNA polymerases I and III subunit RPAC21.5e-1541.24Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK
        M   + TD    TF + +EDHTL N +RY + ++P V FCGY+  HPS++++N+R+QT G L A E  +     L+ VCQHV   F+ ++ D+K  K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC26.8e-1642.55Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        M   + TD    TF + +EDHTL NS+RY + ++P V FCGY+  HPS++++N+R+QT G L A E  +    +LM VCQHV + F+ ++ ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDL-AREVLKDACQNLMVVCQHVRNTFDKAVLDFK

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC21.4e-1646.67Show/hide
Query:  DESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK
        +ES  TF + +EDHTL NS+RY + ++P V FCGYSI HPS+ ++N R+QT  G  A E  +     L+ VCQHV NTF+ ++ ++K  K
Subjt:  DESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC21.5e-1547.13Show/hide
Query:  DESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        DE   TF + +EDHTL NS+RY + +   V FCGYSI HPS++++N R+QT  G  A E L++   NL  VC+HV  TF+  + +FK
Subjt:  DESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit2.6e-3165.59Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        MEHGSFT+ S ++F++++EDHTLAN++R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGD AREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK

AT2G29540.2 RNApolymerase 14 kDa subunit2.6e-3165.59Show/hide
Query:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        MEHGSFT+ S ++F++++EDHTLAN++R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGD AREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK

AT2G29540.3 RNApolymerase 14 kDa subunit6.3e-1767.8Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK
        PRVT   Y+IPHPS  +VNIRVQTTGD AREV KDACQ LM + +HVR+ FDKAV ++K
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFK

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like1.2e-0730.49Show/hide
Query:  STFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLA-REVLKDACQNLMVVCQHVRNTFDKAVLDF
        ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V  F
Subjt:  STFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLA-REVLKDACQNLMVVCQHVRNTFDKAVLDF

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like9.5e-0538.64Show/hide
Query:  STFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIR
        ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R
Subjt:  STFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGAGGTAGGTAGCGATATCTACTATGGTTGGCGGTGGGAATGCAGGGTTTTTTGGCTCTCACGACCAGACGGTATGTTTGTCAAGGTGGAAGATGAAGGGTGTTT
TGGCGGTGGTAATGGAGGTTTTTTGGGTCTCGAGGTTTGTTGGGGATGGAGACGAGTAGACGGGGCTGGTGCATGTGGGGGGTGCAGGTGGGTGCTCATAAATGCAGCAG
TAAATATGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGATGGACA
GGAATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGGACTTTGTACTCATTGTCCGACAAGCCTCCTTCCACGATTTCACCGTCTC
CGCTCTCTCTGTTCTTCTACAGCTCGCCGGCCGGCAGAAATCTCCGTCTTCTCGCCTTCTTTCTCTCTCTCTCTCGGTAATCAGTTCTATCTCTCTTTACTTTTTAGTTA
CGAAGAATCTAATGGAACCTGTATCGAAAGATGGGTATTGCAAACCATCTGATTCTAGGTTACTCTGTGCACCAATGGAACATGGATCCTTCACGGATGAGAGCAAATCA
ACATTTTCTATGGCTGATGAAGATCATACACTTGCAAACTCCATCAGATACACTTTGAATCAAGATCCAAGAGTGACGTTCTGTGGGTACAGCATCCCTCATCCTTCAGA
TAACCGAGTTAATATCAGGGTCCAAACGACAGGTGATCTAGCAAGAGAGGTTTTGAAAGATGCGTGTCAGAACTTGATGGTTGTGTGCCAGCATGTGAGGAACACATTCG
ACAAGGCTGTTCTTGATTTCAAACTCACCAAGCCAGTGGAAGACATTAATATCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGAGGTAGGTAGCGATATCTACTATGGTTGGCGGTGGGAATGCAGGGTTTTTTGGCTCTCACGACCAGACGGTATGTTTGTCAAGGTGGAAGATGAAGGGTGTTT
TGGCGGTGGTAATGGAGGTTTTTTGGGTCTCGAGGTTTGTTGGGGATGGAGACGAGTAGACGGGGCTGGTGCATGTGGGGGGTGCAGGTGGGTGCTCATAAATGCAGCAG
TAAATATGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGATGGACA
GGAATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGGACTTTGTACTCATTGTCCGACAAGCCTCCTTCCACGATTTCACCGTCTC
CGCTCTCTCTGTTCTTCTACAGCTCGCCGGCCGGCAGAAATCTCCGTCTTCTCGCCTTCTTTCTCTCTCTCTCTCGGTAATCAGTTCTATCTCTCTTTACTTTTTAGTTA
CGAAGAATCTAATGGAACCTGTATCGAAAGATGGGTATTGCAAACCATCTGATTCTAGGTTACTCTGTGCACCAATGGAACATGGATCCTTCACGGATGAGAGCAAATCA
ACATTTTCTATGGCTGATGAAGATCATACACTTGCAAACTCCATCAGATACACTTTGAATCAAGATCCAAGAGTGACGTTCTGTGGGTACAGCATCCCTCATCCTTCAGA
TAACCGAGTTAATATCAGGGTCCAAACGACAGGTGATCTAGCAAGAGAGGTTTTGAAAGATGCGTGTCAGAACTTGATGGTTGTGTGCCAGCATGTGAGGAACACATTCG
ACAAGGCTGTTCTTGATTTCAAACTCACCAAGCCAGTGGAAGACATTAATATCGAATAG
Protein sequenceShow/hide protein sequence
MREVGSDIYYGWRWECRVFWLSRPDGMFVKVEDEGCFGGGNGGFLGLEVCWGWRRVDGAGACGGCRWVLINAAVNMQMDRDVVPDQWSSEVFLSTDGVVELCTHCPTRWT
GMLFLINGVQRCFSLLTGWLDFVLIVRQASFHDFTVSALSVLLQLAGRQKSPSSRLLSLSLSVISSISLYFLVTKNLMEPVSKDGYCKPSDSRLLCAPMEHGSFTDESKS
TFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDLAREVLKDACQNLMVVCQHVRNTFDKAVLDFKLTKPVEDINIE