CuGenDBv2

Gene ID	Lag0023320
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DExH-box ATP-dependent RNA helicase DExH11
Genome location	chr7:47157629..47159815
RNA-Seq Expression	Lag0023320
Synteny	Lag0023320
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR025696 - rRNA-processing arch domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7036972.1 DExH-box ATP-dependent RNA helicase DExH11, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.4e-97

86.92

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D  KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

XP_022150906.1 DExH-box ATP-dependent RNA helicase DExH11 [Momordica charantia]

3.9e-98

87.38

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEPTIEEYYDLYA AEKH+NQI EAVMQSSA+QQFLT GRVVVVKS SAKDHLLAVIVK L M S+QYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        SGD++KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPH GAAAGVSYEVRGVDAKEFLC+CNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK+PPALDP+K
Subjt:  KSDGKHPPALDPLK

XP_023524999.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 [Cucurbita pepo subsp. pepo]

2.5e-97

86.92

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQI EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D +KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SG+VNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

XP_023525002.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Cucurbita pepo subsp. pepo]

2.5e-97

86.92

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQI EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D +KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SG+VNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

XP_038896038.1 DExH-box ATP-dependent RNA helicase DExH11 isoform X2 [Benincasa hispida]

7.4e-97

86.92

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEPTIEEYY+LYAEAEK +NQI EAVMQSSAIQQFLTPGRVV++KSQSAKDHLL VIVK L +VSRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        SGD+EKK ED  QGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAA GVSYEVRGVDAKEFLCVC+KKIKLDPGRLLEEVSNVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK+PPALDPLK
Subjt:  KSDGKHPPALDPLK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DCW3 DExH-box ATP-dependent RNA helicase DExH11

1.9e-98

87.38

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEPTIEEYYDLYA AEKH+NQI EAVMQSSA+QQFLT GRVVVVKS SAKDHLLAVIVK L M S+QYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        SGD++KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPH GAAAGVSYEVRGVDAKEFLC+CNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK+PPALDP+K
Subjt:  KSDGKHPPALDPLK

A0A6J1G9X2 DExH-box ATP-dependent RNA helicase DExH11 isoform X5

8.0e-97

86.45

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D  KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

A0A6J1G9Z1 DExH-box ATP-dependent RNA helicase DExH11 isoform X2

8.0e-97

86.45

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D  KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

A0A6J1GAJ6 DExH-box ATP-dependent RNA helicase DExH11 isoform X4

8.0e-97

86.45

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D  KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

A0A6J1GAL5 DExH-box ATP-dependent RNA helicase DExH11 isoform X3

8.0e-97

86.45

Show/hide

Query:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS
        L R+     R + CIKGEP IEEYYDLYAEAEK++NQ+ EAVMQSSAIQQFLTPGRVVVVKSQS KDHLL+VIVK LPM SRQYIVLVLKPDSPPVQSSS
Subjt:  LRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSS

Query:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI
        S D  KKKEDFPQGYFMVPKSKRGLENDYYSPSTRK SGVVNIRLPHAGAAAGVSYEVRGVDAKEF+CVCNKKI+L+PGRLLE+V+NVAYSQTVQQLLDI
Subjt:  SGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDI

Query:  KSDGKHPPALDPLK
        KSDGK PPALDPLK
Subjt:  KSDGKHPPALDPLK

SwissProt top hits

e value

%identity

Alignment

F4JAA5 DExH-box ATP-dependent RNA helicase DExH11

1.7e-56

55.07

Show/hide

Query:  RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKE
        + + CIKGEP IE+YYD+Y EA ++NN++ EAVMQS   Q FL  GRVVV+KS    D+LL +++K     +RQY+VLV+K + PP + +    + KK  
Subjt:  RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKE

Query:  DFPQGYFMVPKSKRGLENDYYS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDG-KHP
        D  QGYF+ PKSKRG E ++Y+ PS+RK   V+ I LP+ G AAGV YEV+G D KEFLC+C+ KIK+D  RLLE+ +  A+SQTVQQLLD+KSDG K P
Subjt:  DFPQGYFMVPKSKRGLENDYYS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDG-KHP

Query:  PALDPLK
        PALDP+K
Subjt:  PALDPLK

Arabidopsis top hits

e value

%identity

Alignment

AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein

1.2e-57

55.07

Show/hide

Query:  RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKE
        + + CIKGEP IE+YYD+Y EA ++NN++ EAVMQS   Q FL  GRVVV+KS    D+LL +++K     +RQY+VLV+K + PP + +    + KK  
Subjt:  RRLGCIKGEPTIEEYYDLYAEAEKHNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKE

Query:  DFPQGYFMVPKSKRGLENDYYS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDG-KHP
        D  QGYF+ PKSKRG E ++Y+ PS+RK   V+ I LP+ G AAGV YEV+G D KEFLC+C+ KIK+D  RLLE+ +  A+SQTVQQLLD+KSDG K P
Subjt:  DFPQGYFMVPKSKRGLENDYYS-PSTRKASGVVNIRLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDG-KHP

Query:  PALDPLK
        PALDP+K
Subjt:  PALDPLK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGTTTAGAAGCTTCAATTAAGCTTCTGGATATTCTGATTGGGTTGCGGTTGGCTGGCAGCGGAAAACCCACTAAGTGTCTTGGATGGCAACAGAAGGAAAAAACCAC
AAAGTGCCCTGAGACCAGAAACCCACGAAGCAAAGCAGTGTGTCGAGTTGTTGCTGACAGAAAAATAGACGTGGTAGTGGGTTTTGCTCCGGGCTGCGACGGTGATGAGC
TCTGCTCCGAGTTGCGGCGGCGATCAACGAACAAAGAACGACGGCTAGGATGTATTAAAGGTGAGCCAACCATTGAGGAATACTACGACTTATATGCTGAAGCTGAGAAG
CATAACAACCAGATCTTAGAAGCAGTCATGCAATCGTCTGCAATTCAACAATTTCTTACTCCTGGAAGAGTGGTCGTTGTAAAATCACAGTCTGCCAAAGATCACTTACT
TGCAGTCATTGTCAAACCCCTTCCCATGGTTAGCAGGCAATATATTGTTTTGGTGCTGAAACCTGATTCACCACCTGTTCAAAGTTCTTCAAGTGGTGATGTAGAAAAGA
AAAAAGAGGATTTCCCCCAAGGTTACTTTATGGTACCAAAGTCAAAACGTGGTCTTGAAAATGATTATTATTCTCCATCTACACGTAAAGCATCTGGTGTCGTGAATATA
AGATTACCACATGCTGGTGCAGCAGCAGGCGTAAGTTATGAGGTTAGAGGAGTTGATGCCAAAGAATTTTTGTGTGTATGCAATAAAAAGATAAAATTAGATCCAGGTAG
GCTTCTTGAAGAAGTAAGCAATGTTGCCTACTCCCAAACTGTTCAACAGCTTTTGGATATAAAATCTGATGGGAAGCACCCTCCTGCCTTAGATCCGTTAAAAGTTAAGT
TTCCTACTTTTATTTCCTTTCTTTTGATGGGAGTTTAA

mRNA sequence

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Protein sequence

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MCLEASIKLLDILIGLRLAGSGKPTKCLGWQQKEKTTKCPETRNPRSKAVCRVVADRKIDVVVGFAPGCDGDELCSELRRRSTNKERRLGCIKGEPTIEEYYDLYAEAEK
HNNQILEAVMQSSAIQQFLTPGRVVVVKSQSAKDHLLAVIVKPLPMVSRQYIVLVLKPDSPPVQSSSSGDVEKKKEDFPQGYFMVPKSKRGLENDYYSPSTRKASGVVNI
RLPHAGAAAGVSYEVRGVDAKEFLCVCNKKIKLDPGRLLEEVSNVAYSQTVQQLLDIKSDGKHPPALDPLKVKFPTFISFLLMGV

Lag0023320 (gene) of Sponge gourd (AG-4) v1 genome