; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0023321 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023321
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionZinc finger, CCHC-type
Genome locationchr7:47162854..47167448
RNA-Seq ExpressionLag0023321
SyntenyLag0023321
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.3e-1968.29Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK
        N +  +LE I VK++DEDKALRLILSL +SYEHMKPILMY KETL + DVT KLLSE++RL S GHTS E +VL+  NGKKK
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.3e-1968.29Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK
        N +  +LE I VK++DEDKALRLILSL +SYEHMKPILMY KETL + DVT KLLSE++RL S GHTS E +VL+  NGKKK
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK

PON72378.1 Zinc finger, CCHC-type [Trema orientale]8.3e-1966.67Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK
        NG+  +LE I VKIDDEDKALRLI SLP+SYEHMKPIL+Y KET+ F +VTS LLSE+RRL   G+ S E SVL   NGKKK+S +K
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK

PON84950.1 Zinc finger, CCHC-type [Trema orientale]2.0e-1764.37Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK
        NG+  +LE I VKIDDEDKALRLI SLP+SYEHMK IL+Y KET+ F +VTS LLSE+RRL   G+ S E S L+  NGKKK+S +K
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.3e-2478.65Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASN-GKKKDSVQKK
        N +  +LE IEVKIDDEDKALRLILSLP SYEHMKPILMY K+TL+F +VTSKLLSE+RRLKSEG TS EDS LV SN  KKKDSVQKK
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASN-GKKKDSVQKK

TrEMBL top hitse value%identityAlignment
A0A2P5DGF9 Zinc finger, CCHC-type4.0e-1966.67Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK
        NG+  +LE I VKIDDEDKALRLI SLP+SYEHMKPIL+Y KET+ F +VTS LLSE+RRL   G+ S E SVL   NGKKK+S +K
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK

A0A2P5EHD2 Zinc finger, CCHC-type9.9e-1864.37Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK
        NG+  +LE I VKIDDEDKALRLI SLP+SYEHMK IL+Y KET+ F +VTS LLSE+RRL   G+ S E S L+  NGKKK+S +K
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKKDSVQK

A0A444XD23 Uncharacterized protein1.0e-1458.54Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK
        NG+  +LE I VKIDDEDKALRLILSLP+SYE++K +LMY KETL+F +V SKL++E+RR+K+EG TS + +++  S+   K
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASNGKKK

A0A6J1CG82 uncharacterized protein LOC1110105216.4e-2578.65Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASN-GKKKDSVQKK
        N +  +LE IEVKIDDEDKALRLILSLP SYEHMKPILMY K+TL+F +VTSKLLSE+RRLKSEG TS EDS LV SN  KKKDSVQKK
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDSVLVASN-GKKKDSVQKK

A0A6J1CTL7 uncharacterized protein LOC1110146513.2e-1672.22Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDS
        N +  +LE IEVKIDDEDKALRLILSL  SYEHMKPILMY K+ L+F + TSKLL EKRRLKSEG TS+ D+
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLSEKRRLKSEGHTSQEDS

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-0538.27Show/hide
Query:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSK-LLSEKRRLKSEGHTSQEDSVLVASNGK
        NG+  +L  + VKI++EDKA+ L+ SLP+SY+++   +++ K T+   DVTS  LL+EK R K E   +Q  +++    G+
Subjt:  NGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSK-LLSEKRRLKSEGHTSQEDSVLVASNGK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTGTGGTTGCAGCATTTTTTACCTTCCACATCAGAAAAGATTTCTAGAAATAAACTTAGGATGTGCTGATACAATCTGGATTACACAAGGCCTTGAGAGAAGACC
AAGCGATAATGCTTCCAAAAGATTAAGCGGAGATGGTGGTCCAATGGAGTCCAATGGGGTTCCAGTAAAGCTGGAGGTGATCGAAGTTAAGATAGATGATGAGGATAAGG
CACTCAGGCTTATCTTGTCACTTCCAACTTCTTATGAACACATGAAGCCAATCTTGATGTACATGAAGGAAACATTAAGTTTTGTTGATGTTACTAGTAAATTGTTATCT
GAGAAAAGAAGGCTGAAGAGTGAAGGGCATACTTCACAAGAGGATTCAGTGCTAGTAGCTAGCAATGGGAAGAAGAAAGATTCTGTGCAAAAGAAAGGGGAGATAGTGAA
TTCCTCTGAAGAAAGACAGAATTCATCATCATGGTATGTCTGCTTTACCATGATAGAGGATGTGATGTTGGCGGTTCCACAAGTTTGCACATGGGCATTGGCTTGGCAGT
TATGCAAGGTGTGTGGTGGATGTTGTGTCGATGGTTGGAAAACTTTCGGGTTACAGTTCTCTGAGTTGAGAATTATGATTGTCGATGAAGACAATGGTTGTAGCAAGAGT
TGTGGATTCTTCAAACATCTTGCCAAGGTGGAATTTGTTGGGTCTTTTGGCAAAATATTAGAAGTGAGTAGTCCCACATCGGAAAGGTTCAAGGAAGTGATGGGCTCCAA
GTACTATAAAAGGAGCCTATGGATTTGGTTTCAAATCATCCTAAGTAGAATCACTTTAAGTCTGGTAGAATCCTTGGTGTCGAACAAAGAAGTTGTGAGCCTTGATAGTC
ATGGTGGAGGTTTGTGGTTGAGCTCTGGGCAAGCAGGGAAGGATTGTTGGGAATGCGACCAAAGTCCCACATTGGCTAGACAAGGGGATGATCATGGCTTAGTGCTTAAA
CCTTTCTCATTTACTAGAATCAGAGCCATAATAGCTGACCCCATAAATAACACACCCATCCCAACCTTGCCAAAAGAACCACATAACCAAGACCTGAAACCAACAAGCCT
GAAGCAAGCAAACCAGTGGCTGTTGAAAGTAGTCACTGTGAACAACAAGTTTGAAGGCCATCTCACTGGAAAATCTCCCTACCCTGAGATGTCTATTGTGATTCCACCAT
CTGAGGAAGAACCTAAAGGACTACTGCTACCCAATCCAGAGCACTATATATGGCTCATTGCTAACCTACCACTGTTGGTAGGTCATTCCCAGAACACTGGAACTAATACC
TCCAACACCAATCCGAATGCATCTGCTTTAGCAGGACCAATTACTTTAATGGCCTATCCTAAAACCATCCAAGACCCAGCATGCATGAAAAAGAATCTAATAAGTATCTC
CAAGTTAACCAAGGATGACTTTGTGGTTGTTGAATTCTGTGACTTGGGTTGTTTTGTCAAGGAAAAGAAGTCCAAAGTAGTGGTCTTGGAAGGGAGGCTTGAGAATGGGC
TGCATATATTGCAAGAAGTAAAGGAAGCCTCAGAACAAACTATTGGGAATAAAGTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTGTGGTTGCAGCATTTTTTACCTTCCACATCAGAAAAGATTTCTAGAAATAAACTTAGGATGTGCTGATACAATCTGGATTACACAAGGCCTTGAGAGAAGACC
AAGCGATAATGCTTCCAAAAGATTAAGCGGAGATGGTGGTCCAATGGAGTCCAATGGGGTTCCAGTAAAGCTGGAGGTGATCGAAGTTAAGATAGATGATGAGGATAAGG
CACTCAGGCTTATCTTGTCACTTCCAACTTCTTATGAACACATGAAGCCAATCTTGATGTACATGAAGGAAACATTAAGTTTTGTTGATGTTACTAGTAAATTGTTATCT
GAGAAAAGAAGGCTGAAGAGTGAAGGGCATACTTCACAAGAGGATTCAGTGCTAGTAGCTAGCAATGGGAAGAAGAAAGATTCTGTGCAAAAGAAAGGGGAGATAGTGAA
TTCCTCTGAAGAAAGACAGAATTCATCATCATGGTATGTCTGCTTTACCATGATAGAGGATGTGATGTTGGCGGTTCCACAAGTTTGCACATGGGCATTGGCTTGGCAGT
TATGCAAGGTGTGTGGTGGATGTTGTGTCGATGGTTGGAAAACTTTCGGGTTACAGTTCTCTGAGTTGAGAATTATGATTGTCGATGAAGACAATGGTTGTAGCAAGAGT
TGTGGATTCTTCAAACATCTTGCCAAGGTGGAATTTGTTGGGTCTTTTGGCAAAATATTAGAAGTGAGTAGTCCCACATCGGAAAGGTTCAAGGAAGTGATGGGCTCCAA
GTACTATAAAAGGAGCCTATGGATTTGGTTTCAAATCATCCTAAGTAGAATCACTTTAAGTCTGGTAGAATCCTTGGTGTCGAACAAAGAAGTTGTGAGCCTTGATAGTC
ATGGTGGAGGTTTGTGGTTGAGCTCTGGGCAAGCAGGGAAGGATTGTTGGGAATGCGACCAAAGTCCCACATTGGCTAGACAAGGGGATGATCATGGCTTAGTGCTTAAA
CCTTTCTCATTTACTAGAATCAGAGCCATAATAGCTGACCCCATAAATAACACACCCATCCCAACCTTGCCAAAAGAACCACATAACCAAGACCTGAAACCAACAAGCCT
GAAGCAAGCAAACCAGTGGCTGTTGAAAGTAGTCACTGTGAACAACAAGTTTGAAGGCCATCTCACTGGAAAATCTCCCTACCCTGAGATGTCTATTGTGATTCCACCAT
CTGAGGAAGAACCTAAAGGACTACTGCTACCCAATCCAGAGCACTATATATGGCTCATTGCTAACCTACCACTGTTGGTAGGTCATTCCCAGAACACTGGAACTAATACC
TCCAACACCAATCCGAATGCATCTGCTTTAGCAGGACCAATTACTTTAATGGCCTATCCTAAAACCATCCAAGACCCAGCATGCATGAAAAAGAATCTAATAAGTATCTC
CAAGTTAACCAAGGATGACTTTGTGGTTGTTGAATTCTGTGACTTGGGTTGTTTTGTCAAGGAAAAGAAGTCCAAAGTAGTGGTCTTGGAAGGGAGGCTTGAGAATGGGC
TGCATATATTGCAAGAAGTAAAGGAAGCCTCAGAACAAACTATTGGGAATAAAGTTGTCTGA
Protein sequenceShow/hide protein sequence
MLCGCSIFYLPHQKRFLEINLGCADTIWITQGLERRPSDNASKRLSGDGGPMESNGVPVKLEVIEVKIDDEDKALRLILSLPTSYEHMKPILMYMKETLSFVDVTSKLLS
EKRRLKSEGHTSQEDSVLVASNGKKKDSVQKKGEIVNSSEERQNSSSWYVCFTMIEDVMLAVPQVCTWALAWQLCKVCGGCCVDGWKTFGLQFSELRIMIVDEDNGCSKS
CGFFKHLAKVEFVGSFGKILEVSSPTSERFKEVMGSKYYKRSLWIWFQIILSRITLSLVESLVSNKEVVSLDSHGGGLWLSSGQAGKDCWECDQSPTLARQGDDHGLVLK
PFSFTRIRAIIADPINNTPIPTLPKEPHNQDLKPTSLKQANQWLLKVVTVNNKFEGHLTGKSPYPEMSIVIPPSEEEPKGLLLPNPEHYIWLIANLPLLVGHSQNTGTNT
SNTNPNASALAGPITLMAYPKTIQDPACMKKNLISISKLTKDDFVVVEFCDLGCFVKEKKSKVVVLEGRLENGLHILQEVKEASEQTIGNKVV