| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 8.3e-156 | 40.36 | Show/hide |
Query: SPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQ
S + N L + + S+KLDR+N+ LWK+L LP++R KL+G++ G + CP+ +I++++ +SA + W A DQ
Subjt: SPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQ
Query: LLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNP
LLGW+ NSMT E+ATQ++ E S++LW Q L G +R++ YL+ F RKG +KM +YL MK+ D L AG+PVS +L+ Q L GLD EYNP
Subjt: LLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNP
Query: VVAMIQGRVGIS-----------------------------CGYRQNSYGRGGQRGNGYRG---RGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRF
VV + + +S S RG N +RG RG G G G N CQV G H+A++C+ RF
Subjt: VVAMIQGRVGIS-----------------------------CGYRQNSYGRGGQRGNGYRG---RGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRF
Query: NKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDG
+K ++ N + G + S NAF+ASQ++ V D WY DSGASNHVT + TE+ G + VG+G KL I GSS L
Subjt: NKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDG
Query: YNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSN
LNL ++L VPNI KNL+SVSKLA DNN+ VEF EN C VKDK TG+V+LKG L DGL Q + K SAFV
Subjt: YNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSN
Query: SSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVW
S WH+RLGHP+ KVL+ ++SC + V ++ FC+ACQ+GK H+LPF S S A EL+HTD+WGPAP+ + G KYYV FVDD+SR+ W
Subjt: SSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVW
Query: IYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA----------------
IYPLKQK++T AF F + +NQF+ +K IQ + GGEY P+ KL GI+ R++CPYTSQQNGR ERKH HI E GLTLLA
Subjt: IYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA----------------
Query: ---------QVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSFGKA
QV ++P +LM +K D+ L+ FGCAC+PCL+PY K Q+H+ +C +LG S HKG+KC+ + GR+FIS +V FNE FPF F
Subjt: ---------QVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSFGKA
Query: STSPTDSPSSPPIHMWFSNLPTVSA
T SP I++ ++ P +A
Subjt: STSPTDSPSSPPIHMWFSNLPTVSA
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| GAU51268.1 hypothetical protein TSUD_412550 [Trifolium subterraneum] | 2.5e-152 | 39.5 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
NSP N L + I S+KLDR N+ LWK+L L ++R KL+G++ G CP+ ++ TS+ +NP + W+A D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Q LLGWL NSM ++ATQ++ E S++LW Q L G ++++ YL+ F +RKG +KM EYL MK+ +D L AGSP+S +L+ Q L GLD EYN
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
PVV + ++ G++ N + RGN + RG R G G G +N + CQV GH+A++C
Subjt: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
Query: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
RF++ +TG R +T Q S + F+ASP D WY DSGA+NHVT + E+ G + VG+G KL I GS+ L
Subjt: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
Query: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
N LNL +VL VP I KNL+SVSKL DNN+ VEF N C VKDK TG+ +LKG L DGL Q N V +S
Subjt: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
Query: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
K WH++LGHP+ KVL+ +K C++ + +++ FC+ACQFGK H+LPF S S LIH+D+WGPAP+ S G KYYV F+DD+SR
Subjt: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
Query: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
+ WI+PLKQK+DT AF F + +NQF+ +K IQ + GGEY + K+ GI+ R++CPYTSQQNGR ERKH H+ E+GLTLLAQ
Subjt: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
Query: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
+IN ++P +LMFK+ D+ AL+ FGCAC+PCL+PY K QFH+ +C ++G S HKG+KC+ + GR+F+S +V FNE FPF F
Subjt: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 3.2e-155 | 40.19 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
NS N L + + S+KLDR N+ LW+++ LPI+R +L+G++ G+K CP+ +I+A A SS+ NP++E W A D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Q LLGWL NSMT +ATQ++ E S +LW Q L G +R++ YL+ F +RKG +KM +YL MK+ AD L AG+P+S +L+ Q L GLD EYN
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGRVGISC--------------------------------------GYRQNSYGRGGQRGNGYRGRG-RARGNGYGNYNNNRPVCQVYGKPGHV
PVV + + +S G R NS N +RG R G G + + CQV G H+
Subjt: PVVAMIQGRVGISC--------------------------------------GYRQNSYGRGGQRGNGYRGRG-RARGNGYGNYNNNRPVCQVYGKPGHV
Query: ALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYI
A++C+ RF+K ++ N N S NAF+ASQ++ + D WY DSGASNHVT + N +E+ G + VG+G KL I
Subjt: ALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYI
Query: GSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSV
GSS L LNL ++L VP I KNL+SVSKLA DNN+ VEF EN C VKDK TG+ +L+G L DGL Q +S VS
Subjt: GSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSV
Query: LSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFV
K WH++LGHP+ KVL+ +KSC++ + +++ FC+ACQ+GK H LPF S S A EL+HTD+WGPAP+ S G KYYV F+
Subjt: LSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFV
Query: DDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-------
DD++R+ WIYPLKQK+DT AF F MV+NQF +K+IQ + GGEY P+ K GI+ R++CPYTSQQNGR ERKH HI E GLTLLAQ
Subjt: DDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-------
Query: ------------------VINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFP
V + K+P +L+ K+ D+ +L+ FGCAC+P L+PY K QFH+ +C +LG S HKG+KCV + GR+FIS +V FNE FP
Subjt: ------------------VINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFP
Query: FSTSFGKAST---SPTDSPSSP-PIH
F F + T+SPSS P+H
Subjt: FSTSFGKAST---SPTDSPSSP-PIH
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 1.2e-159 | 42.12 | Show/hide |
Query: SIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLYNSMTP
S+KLDR NF LWK+L LP++R K +G++ G K CP ++ TS TE INP Y+ W A DQ LLGWL NSMT
Subjt: SIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLYNSMTP
Query: EVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQGRVGIS
++ATQV+ E S++LW Q L G +R++ YL+ F + K +KM +YL MK+ AD L AGSP+S +L+ Q L GLD EYNPVV + + IS
Subjt: EVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQGRVGIS
Query: CGYRQ-----------------------------------NSYG-RGGQRGNGYR----GRGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRFNKEF
Q N +G RGG RG+ R GRGRAR + RP+CQ+ GK GH A +CY RF+K +
Subjt: CGYRQ-----------------------------------NSYG-RGGQRGNGYR----GRGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRFNKEF
Query: TGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKL
T + GE + A FVASP D WY DSGASNHVT + + E G + VG+G KL I GS+ L D +
Subjt: TGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKL
Query: NLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKA
NL NVL VP I KNL+SVSKL DNN VEF EN+C VKDK TG+ +LKG L DGL Q S+N N + +
Subjt: NLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKA
Query: VSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPL
K +WH++LGHP+ KVLE +K ++ + ++K FC+ACQFGK H+LPF S S A +LIHTD+WGPAP+ S KYYV F+DD+SR+ WI+PL
Subjt: VSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPL
Query: KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-----------------VI
KQK++T AFN F +V+NQF+ +K I+ + GGEY P+ K GI+ +++CPYTSQQNGR ERKH H+ E+GLTLLAQ +I
Subjt: KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-----------------VI
Query: N--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
N ++P TL+FKK D+ AL+ FGCAC+PCL+PY K QFH+ +C +LG S HKG+KCV + GRVF+S +V FNE FPF F
Subjt: N--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 1.3e-145 | 39.67 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
NS N L + I S+KLDR N+ LWK+L LP++R K +G++ G K CP+ ++ TS+ +NP ++ WMA D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Q LLGWL NSM ++ATQ++ E S++LW Q L G ++++ YL+ F +RKG +KM EYL MK+ +D L +GSP+S +L+ Q L GLD EYN
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
PVV + ++ G++ N + RGN + RG R G G G +N + CQV GH A++C
Subjt: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
Query: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
RF++ +TG R +T Q S + FVASP D WY DSGASNHVT + E+ G + VG+G KL I GS+ L
Subjt: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
Query: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
N LNL +VL VP I KNL+SVSKL DNN+FVEF N C VKDK TG+ +LKG L DGL Q +V+ +N + V +
Subjt: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
Query: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
K WH++LGHP+ KVLE +K C++ + +++ FC+ACQFGK H+LPF S S LIH+D+WGPAP+ S G KYYV F+DD+SR
Subjt: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
Query: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
+ WI+PLKQK+DT AF F + +NQF+ +K IQ + GGEY + K+ GI+ R++CPYTSQQNGR ERKH H+VE+GLTLLAQ
Subjt: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
Query: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATG
+IN ++P +LMFK+ D+ AL+ FGCAC+PCL+PY K QFH+ +C ++G S HKG A G
Subjt: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 1.5e-155 | 40.19 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
NS N L + + S+KLDR N+ LW+++ LPI+R +L+G++ G+K CP+ +I+A A SS+ NP++E W A D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Q LLGWL NSMT +ATQ++ E S +LW Q L G +R++ YL+ F +RKG +KM +YL MK+ AD L AG+P+S +L+ Q L GLD EYN
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGRVGISC--------------------------------------GYRQNSYGRGGQRGNGYRGRG-RARGNGYGNYNNNRPVCQVYGKPGHV
PVV + + +S G R NS N +RG R G G + + CQV G H+
Subjt: PVVAMIQGRVGISC--------------------------------------GYRQNSYGRGGQRGNGYRGRG-RARGNGYGNYNNNRPVCQVYGKPGHV
Query: ALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYI
A++C+ RF+K ++ N N S NAF+ASQ++ + D WY DSGASNHVT + N +E+ G + VG+G KL I
Subjt: ALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYI
Query: GSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSV
GSS L LNL ++L VP I KNL+SVSKLA DNN+ VEF EN C VKDK TG+ +L+G L DGL Q +S VS
Subjt: GSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSV
Query: LSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFV
K WH++LGHP+ KVL+ +KSC++ + +++ FC+ACQ+GK H LPF S S A EL+HTD+WGPAP+ S G KYYV F+
Subjt: LSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFV
Query: DDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-------
DD++R+ WIYPLKQK+DT AF F MV+NQF +K+IQ + GGEY P+ K GI+ R++CPYTSQQNGR ERKH HI E GLTLLAQ
Subjt: DDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-------
Query: ------------------VINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFP
V + K+P +L+ K+ D+ +L+ FGCAC+P L+PY K QFH+ +C +LG S HKG+KCV + GR+FIS +V FNE FP
Subjt: ------------------VINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFP
Query: FSTSFGKAST---SPTDSPSSP-PIH
F F + T+SPSS P+H
Subjt: FSTSFGKAST---SPTDSPSSP-PIH
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 6.0e-160 | 42.12 | Show/hide |
Query: SIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLYNSMTP
S+KLDR NF LWK+L LP++R K +G++ G K CP ++ TS TE INP Y+ W A DQ LLGWL NSMT
Subjt: SIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLYNSMTP
Query: EVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQGRVGIS
++ATQV+ E S++LW Q L G +R++ YL+ F + K +KM +YL MK+ AD L AGSP+S +L+ Q L GLD EYNPVV + + IS
Subjt: EVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQGRVGIS
Query: CGYRQ-----------------------------------NSYG-RGGQRGNGYR----GRGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRFNKEF
Q N +G RGG RG+ R GRGRAR + RP+CQ+ GK GH A +CY RF+K +
Subjt: CGYRQ-----------------------------------NSYG-RGGQRGNGYR----GRGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRFNKEF
Query: TGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKL
T + GE + A FVASP D WY DSGASNHVT + + E G + VG+G KL I GS+ L D +
Subjt: TGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKL
Query: NLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKA
NL NVL VP I KNL+SVSKL DNN VEF EN+C VKDK TG+ +LKG L DGL Q S+N N + +
Subjt: NLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKA
Query: VSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPL
K +WH++LGHP+ KVLE +K ++ + ++K FC+ACQFGK H+LPF S S A +LIHTD+WGPAP+ S KYYV F+DD+SR+ WI+PL
Subjt: VSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPL
Query: KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-----------------VI
KQK++T AFN F +V+NQF+ +K I+ + GGEY P+ K GI+ +++CPYTSQQNGR ERKH H+ E+GLTLLAQ +I
Subjt: KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ-----------------VI
Query: N--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
N ++P TL+FKK D+ AL+ FGCAC+PCL+PY K QFH+ +C +LG S HKG+KCV + GRVF+S +V FNE FPF F
Subjt: N--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 4.0e-156 | 40.36 | Show/hide |
Query: SPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQ
S + N L + + S+KLDR+N+ LWK+L LP++R KL+G++ G + CP+ +I++++ +SA + W A DQ
Subjt: SPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQ
Query: LLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNP
LLGW+ NSMT E+ATQ++ E S++LW Q L G +R++ YL+ F RKG +KM +YL MK+ D L AG+PVS +L+ Q L GLD EYNP
Subjt: LLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNP
Query: VVAMIQGRVGIS-----------------------------CGYRQNSYGRGGQRGNGYRG---RGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRF
VV + + +S S RG N +RG RG G G G N CQV G H+A++C+ RF
Subjt: VVAMIQGRVGIS-----------------------------CGYRQNSYGRGGQRGNGYRG---RGRARGNGYGNYNNNRPVCQVYGKPGHVALECYQRF
Query: NKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDG
+K ++ N + G + S NAF+ASQ++ V D WY DSGASNHVT + TE+ G + VG+G KL I GSS L
Subjt: NKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDG
Query: YNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSN
LNL ++L VPNI KNL+SVSKLA DNN+ VEF EN C VKDK TG+V+LKG L DGL Q + K SAFV
Subjt: YNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSN
Query: SSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVW
S WH+RLGHP+ KVL+ ++SC + V ++ FC+ACQ+GK H+LPF S S A EL+HTD+WGPAP+ + G KYYV FVDD+SR+ W
Subjt: SSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVW
Query: IYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA----------------
IYPLKQK++T AF F + +NQF+ +K IQ + GGEY P+ KL GI+ R++CPYTSQQNGR ERKH HI E GLTLLA
Subjt: IYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA----------------
Query: ---------QVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSFGKA
QV ++P +LM +K D+ L+ FGCAC+PCL+PY K Q+H+ +C +LG S HKG+KC+ + GR+FIS +V FNE FPF F
Subjt: ---------QVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSFGKA
Query: STSPTDSPSSPPIHMWFSNLPTVSA
T SP I++ ++ P +A
Subjt: STSPTDSPSSPPIHMWFSNLPTVSA
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| A0A2Z6P4D5 Integrase catalytic domain-containing protein | 1.2e-152 | 39.5 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
NSP N L + I S+KLDR N+ LWK+L L ++R KL+G++ G CP+ ++ TS+ +NP + W+A D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Q LLGWL NSM ++ATQ++ E S++LW Q L G ++++ YL+ F +RKG +KM EYL MK+ +D L AGSP+S +L+ Q L GLD EYN
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
PVV + ++ G++ N + RGN + RG R G G G +N + CQV GH+A++C
Subjt: PVVAMIQGRV-------------------------GISCGYRQNSYGRGGQRGNGYRGRGRAR---------GNGYGNYNNNRPVCQVYGKPGHVALECY
Query: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
RF++ +TG R +T Q S + F+ASP D WY DSGA+NHVT + E+ G + VG+G KL I GS+ L
Subjt: QRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCL
Query: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
N LNL +VL VP I KNL+SVSKL DNN+ VEF N C VKDK TG+ +LKG L DGL Q N V +S
Subjt: TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFV
Query: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
K WH++LGHP+ KVL+ +K C++ + +++ FC+ACQFGK H+LPF S S LIH+D+WGPAP+ S G KYYV F+DD+SR
Subjt: LSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSR
Query: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
+ WI+PLKQK+DT AF F + +NQF+ +K IQ + GGEY + K+ GI+ R++CPYTSQQNGR ERKH H+ E+GLTLLAQ
Subjt: YVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQ------------
Query: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
+IN ++P +LMFK+ D+ AL+ FGCAC+PCL+PY K QFH+ +C ++G S HKG+KC+ + GR+F+S +V FNE FPF F
Subjt: -----VIN--------GKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
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| A0A803PEH4 Uncharacterized protein | 1.3e-151 | 41.78 | Show/hide |
Query: MNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLY
+NQ S+KLDR+N+ LWK + I+R ++L G+LSG +CP E V+ G T T NP+YE+W+ DQLL+GWLY
Subjt: MNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVDQLLLGWLY
Query: NSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQG
+SMT +AT+VMG + L ++ L+G S++K D R + Q +RKG+ MSEYLR K+ ++ L AG P +LV+ VL GLD EY +V I+
Subjt: NSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYNPVVAMIQG
Query: R--------------------------------------VGISCGYRQNSYGRGGQ---------------RGNGYRGRGRARGNGYGNYNNNRPVCQVY
R ++ N GRG Q RG R RGR RG G G +RP CQVY
Subjt: R--------------------------------------VGISCGYRQNSYGRGGQ---------------RGNGYRGRGRARGNGYGNYNNNRPVCQVY
Query: GKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNK
GK GH A CY RF++ + G + N N A Q+N + +A FVA+PE++ +W+ADSGASNH+T+D + +Y G E V VG+G+K
Subjt: GKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNK
Query: LHISYIGSSCLT-DGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRV
L I++IG+ L + N L L+++L VP I KNLVSVSKLA DNNV +EF+ NFCLVKDK T +V+L G L D L Q + + +SS+ +
Subjt: LHISYIGSSCLT-DGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRV
Query: NNAEKSVLSAFVLS-----NSSKAVS-----KAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWG
+N LSAF +S N S+ S V H+RLGHPS+KVL ++S ++ V N CDACQ+GKAH LPF S +RA S +LIHTDLWG
Subjt: NNAEKSVLSAFVLS-----NSSKAVS-----KAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWG
Query: PAPVQSVQGLKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHI
PAP+ S YY+ FVDDYSRY W+YPLK K+D AAF F A+V+NQF +KS+++++GGEY P L ++ GI+ + CP+TS QNGR +RKH H
Subjt: PAPVQSVQGLKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHI
Query: VEMGLTLLAQVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
VEMGLTLLAQ CFPCLR YQ+ KFQFHS KC LG S +KG+KC++ TGR++IS +V FNE FPF T F
Subjt: VEMGLTLLAQVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCVTATGRVFISINVTFNEAEFPFSTSF
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.1e-25 | 25.1 | Show/hide |
Query: CQVYGKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVG
C G+ GH+ +C+ + N EN + + AF+ + N ++ + + DSGAS+H+ D + + E ++ V
Subjt: CQVYGKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVG
Query: -DGNKLHISYIGSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSN
G ++ + G L + + ++ LE+VL NL+SV +L ++ + +EF ++ + V G LN +V V N S N
Subjt: -DGNKLHISYIGSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSN
Query: STRVNNAEKSVLSAFVLSNSSKAVSKAVWHKRLGHPS-LKVLESAIKSC----SLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFEL--IHTDLW
+ NN +WH+R GH S K+LE K+ SL + C+ C GK LPF + + K L +H+D+
Subjt: STRVNNAEKSVLSAFVLSNSSKAVSKAVWHKRLGHPS-LKVLESAIKSC----SLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFEL--IHTDLW
Query: GPAPVQSVQGLKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKH
GP ++ Y+VIFVD ++ Y Y +K K+D ++ F F+A + F+ V + +NG EY+ + + C GI LT P+T Q NG +ER
Subjt: GPAPVQSVQGLKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKH
Query: MHIVEMGLTLL---------------------------AQVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHK
I E T++ A V + KTP + K LRVFG + ++ Q KF S K ++G P G K
Subjt: MHIVEMGLTLL---------------------------AQVINGKTPMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHK
Query: CVTATGRVFI
A FI
Subjt: CVTATGRVFI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-40 | 24.36 | Show/hide |
Query: ESWMAVDQLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYL-RQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVL
E W +D+ + ++ +V ++ + ++ +W ++ L+ ++ + YL +Q++ +L + L G + + +L
Subjt: ESWMAVDQLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYL-RQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVL
Query: LGLDEEY-NPVVAMIQGRVGISC--------------------GYRQNSYGRGG--QRGNGYRGRGRARGNGYGNYNNNRPVCQVYGKPGHVALEC--YQ
L Y N ++ G+ I G + GRG QR + GR ARG + C +PGH +C +
Subjt: LGLDEEY-NPVVAMIQGRVGISC--------------------GYRQNSYGRGG--QRGNGYRGRGRARGNGYGNYNNNRPVCQVYGKPGHVALEC--YQ
Query: RFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLH--ISYIGSSC
+ E +G +N +NT Q+N + F+ + ++ PE W D+ AS+H T + Y + TV GN + I+ IG C
Subjt: RFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLH--ISYIGSSC
Query: L-TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSA
+ T+ L L++V VP++ NL+S L RD ++ + L K V+ KG L + NAE +
Subjt: L-TDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSA
Query: FVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDY
L+ + +S +WHKR+GH S K L+ K + + CD C FGK H + F S R + +L+++D+ GP ++S+ G KY+V F+DD
Subjt: FVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVSNEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDY
Query: SRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLL----------
SR +W+Y LK K+ + F F A+V+ + +K ++++NGGEY + C S GI+ T P T Q NG ER + IVE ++L
Subjt: SRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLL----------
Query: -------AQVINGKTPMTLMFK--------KTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKC-VTATGRVFISINVTFNEAE
+IN + L F+ K + + L+VFGC F + Q K S C ++G G++ +V S +V F E+E
Subjt: -------AQVINGKTPMTLMFK--------KTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKC-VTATGRVFISINVTFNEAE
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| Q12501 Transposon Ty2-OR2 Gag-Pol polyprotein | 6.0e-16 | 27.72 | Show/hide |
Query: NSSKAVSKAVW---HKRLGHPSLKVLESAIKSCSLPVV-------SNEKPQFCDACQFGKA----HILPFSESISRASSKFELIHTDLWGPAPVQSVQGL
N SK+V+K + H+ LGH + + ++ ++K ++ + SN C C GK+ H+ + F+ +HTD++GP
Subjt: NSSKAVSKAVW---HKRLGHPSLKVLESAIKSCSLPVV-------SNEKPQFCDACQFGKA----HILPFSESISRASSKFELIHTDLWGPAPVQSVQGL
Query: KYYVIFVDDYSRYVWIYPL--KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLT
Y++ F D+ +R+ W+YPL +++ F LA +KNQF++ V IQ + G EY +HK + GI T S+ +G ER + ++ T
Subjt: KYYVIFVDDYSRYVWIYPL--KQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYI--PIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLT
Query: LL
LL
Subjt: LL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.3e-84 | 29.13 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
N+ LN M+ +T KL +N+L+W + Y+L G L G P I GT + P +NP Y W D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
+L+ + +++ V V + ++W +++++ S LR +Q KG + +Y++ + + D L G P+ V +VL L EEY
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNLKMSEYLRIMKSHADNLGQAGSPVSPRNLVSQVLLGLDEEYN
Query: PVVAMIQGR-------------------------------VGISCGYRQ---NSYGRGGQRGNGYRGRG---------RARGNGYGNYNNNRPV---CQV
PV+ I + + +R + G R N Y R ++ N + N N ++P CQ+
Subjt: PVVAMIQGR-------------------------------VGISCGYRQ---NSYGRGGQRGNGYRGRG---------RARGNGYGNYNNNRPV---CQV
Query: YGKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGN
G GH A C Q + F N + + P T P N + S P+ ++ +W DSGA++H+T+D+N ++ Y G + V V DG+
Subjt: YGKPGHVALECYQRFNKEFTGPQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGN
Query: KLHISYIGSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRV
+ IS+ GS+ L+ LNL N+L VPNI KNL+SV +L N V VEF VKD TG +L+G D L ++ +A+S VS A SS +T
Subjt: KLHISYIGSSCLTDGYNKLNLENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRV
Query: NNAEKSVLSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVS-NEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQG
+ WH RLGHP+ +L S I + SL V++ + K C C K++ +PFS+S ++ E I++D+W +P+ S
Subjt: NNAEKSVLSAFVLSNSSKAVSKAVWHKRLGHPSLKVLESAIKSCSLPVVS-NEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQG
Query: LKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA
+YYVIFVD ++RY W+YPLKQK+ F F +++N+F + + + ++NGGE++ + + GI + P+T + NG +ERKH HIVE GLTLL+
Subjt: LKYYVIFVDDYSRYVWIYPLKQKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLA
Query: QVINGKT-------------------------PMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCV-TATGRVFISIN
KT P +F + ++ LRVFGCAC+P LRPY K S +C +LG S + C+ T R++IS +
Subjt: QVINGKT-------------------------PMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCV-TATGRVFISIN
Query: VTFNEAEFPFSTSFGKASTSPTDSPSSPPIHMW--FSNLPT
V F+E FPFS A+ SP +W + LPT
Subjt: VTFNEAEFPFSTSFGKASTSPTDSPSSPPIHMW--FSNLPT
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.0e-84 | 29.58 | Show/hide |
Query: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
N+ LN M+ +T KL +N+L+W + Y+L G L G P I GT + P +NP Y W D
Subjt: NSPSLNQLMNQITSIKLDRSNFLLWKNLALPILRSYKLEGHLSGEKLCPKMYISATNEGNTSSSATEAGASSSEGVVSGGTSSTPEATINPQYESWMAVD
Query: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNL-KMSEYLRIMKSHADNLGQAGSPVSPR--------------
+L+ + +++ V V + ++W +++++ S LR + + + L K ++ ++ +NL PV +
Subjt: QLLLGWLYNSMTPEVATQVMGFEKSQELWAAIQELFGVQSRAKEDYLRQVFQQSRKGNL-KMSEYLRIMKSHADNLGQAGSPVSPR--------------
Query: ----NLVSQVLLGLDEEYNPVVAMIQGRVGISCGYRQNSYGRGGQRGNGYRGRGRARGNGYGNYNNNRPV------CQVYGKPGHVALECYQRFNKEFTG
N S++L E P+ A + + QN+ G N + + G+ ++NR CQ+ GH A C Q + T
Subjt: ----NLVSQVLLGLDEEYNPVVAMIQGRVGISCGYRQNSYGRGGQRGNGYRGRGRARGNGYGNYNNNRPV------CQVYGKPGHVALECYQRFNKEFTG
Query: PQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKLNL
N+ ++T P T P N V S P+ A+ +W DSGA++H+T+D+N ++ Y G + V + DG+ + I++ GS+ L L+L
Subjt: PQNQNRGENTRPATQSNPSPNAFVASQSTNPFVASPEIVIDPSWYADSGASNHVTTDYNAMANPTEYEGTERVTVGDGNKLHISYIGSSCLTDGYNKLNL
Query: ENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKAVS
VL VPNI KNL+SV +L N V VEF VKD TG +L+G D L ++ +A+S VS A S +T
Subjt: ENVLCVPNIVKNLVSVSKLARDNNVFVEFHENFCLVKDKATGRVVLKGALNDGLNQFVNVAASVDVSNSARRSSNSTRVNNAEKSVLSAFVLSNSSKAVS
Query: KAVWHKRLGHPSLKVLESAIKSCSLPVVS-NEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPLK
+ WH RLGHPSL +L S I + SLPV++ + K C C K+H +PFS S +S E I++D+W +P+ S+ +YYVIFVD ++RY W+YPLK
Subjt: KAVWHKRLGHPSLKVLESAIKSCSLPVVS-NEKPQFCDACQFGKAHILPFSESISRASSKFELIHTDLWGPAPVQSVQGLKYYVIFVDDYSRYVWIYPLK
Query: QKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQVINGKT--------------
QK+ F F ++V+N+F + + ++ ++NGGE++ + GI + P+T + NG +ERKH HIVEMGLTLL+ KT
Subjt: QKNDTYAAFNHFLAMVKNQFDSCVKSIQTNNGGEYIPIHKLCESLGIKIRLTCPYTSQQNGRTERKHMHIVEMGLTLLAQVINGKT--------------
Query: -----------PMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCV-TATGRVFISINVTFNEAEFPFSTSFGKASTSP
P +F + ++ L+VFGCAC+P LRPY K + S++CA++G S + C+ TGR++ S +V F+E FPFST+ STS
Subjt: -----------PMTLMFKKTIDFGALRVFGCACFPCLRPYQTQKFQFHSEKCAYLGPSPVHKGHKCV-TATGRVFISINVTFNEAEFPFSTSFGKASTSP
Query: TDSPSSPPIHMWFSNLPT
S P + LPT
Subjt: TDSPSSPPIHMWFSNLPT
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