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Lag0024101 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024101
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription factor PRE5-like
Genome locationchr10:517412..517776
RNA-Seq ExpressionLag0024101
SyntenyLag0024101
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2174.07Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS   DD+++NL+ +LQ+LLPQLN       S VS AEIL+ETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

TYJ98875.1 transcription factor PRE5-like [Cucumis melo var. makuwa]2.8e-2276.32Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASSK  D+E++NLV KL++LLPQLN KPD+   A S  EIL+ETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]6.0e-2577.78Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK  D+E++NLV KL++LLPQLN KPD+   A S  EIL+ETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]2.4e-2681.48Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK  DDE++NLV KLQ+LLPQLN KP  + S VSA EIL+ETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]1.1e-2679.27Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDS-AVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK ADD++QNLV KLQ+LLP LN KPD+D + +VSA +IL+ETCDYIKKLQREVDDLSERLWKQLDSMGVD EMVKDL+
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDS-AVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

TrEMBL top hitse value%identityAlignment
A0A0A0LQ05 DNA binding protein1.2e-2681.48Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK  DDE++NLV KLQ+LLPQLN KP  + S VSA EIL+ETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

A0A1S3B0J1 transcription factor PRE5-like2.9e-2577.78Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK  D+E++NLV KL++LLPQLN KPD+   A S  EIL+ETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

A0A5A7SZP9 Transcription factor PRE5-like2.9e-2577.78Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSK  D+E++NLV KL++LLPQLN KPD+   A S  EIL+ETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

A0A5D3BKI2 Transcription factor PRE5-like1.3e-2276.32Show/hide
Query:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASSK  D+E++NLV KL++LLPQLN KPD+   A S  EIL+ETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

A0A5N5I0V3 Transcription factor PRE6-like4.8e-1257.32Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMG---VDFEMVKDLL
        +SK +DDEI+ LVLKLQ LLPQL+      ++ VSA+ ILEETC YIK+L REV+DLS+RL + LDS G   VD E+++ LL
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMG---VDFEMVKDLL

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI76.2e-0945.07Show/hide
Query:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGV
        ++++  D++I +LV KLQ+LLP+   + +D    V +A +L+ETC YI+ L REVDDLSERL + L +  V
Subjt:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGV

Q338G6 Transcription factor ILI76.2e-0945.07Show/hide
Query:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGV
        ++++  D++I +LV KLQ+LLP+   + +D    V +A +L+ETC YI+ L REVDDLSERL + L +  V
Subjt:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGV

Q8GW32 Transcription factor PRE66.7e-1145.12Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS+ +DD+I +LV KLQ L+P+L  +  D    VSA+++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

Q9CA64 Transcription factor PRE31.9e-1052.46Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERL
        +S+ ++D+I +L++KLQ LLP+L      D   VSAA +L++TC+YI+ L REVDDLSERL
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE51.9e-1046.48Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S+ +DD++ +LV KL+  LP+++ +   D   VSA+++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVD

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.7e-1245.12Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS+ +DD+I +LV KLQ L+P+L  +  D    VSA+++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.4e-1152.46Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERL
        +S+ ++D+I +L++KLQ LLP+L      D   VSAA +L++TC+YI+ L REVDDLSERL
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-1146.48Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S+ +DD++ +LV KL+  LP+++ +   D   VSA+++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 31.3e-0947.76Show/hide
Query:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDS
        +S   D++I +LVL+L  LLP+L    +     VSA+ +L+ETC YI+ L +EVDDLSERL + L+S
Subjt:  SSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDS

AT5G15160.1 BANQUO 25.8e-1040.58Show/hide
Query:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSM
        +SS+ +DD+I +L+ KL+  +P++  + +   + VSA+++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTTGCTGACGACGAGATTCAAAATCTCGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCCTAAGCCCGACGACGATGACTCAGCGGTGTC
GGCGGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACT
TTGAGATGGTTAAAGATCTTCTTTTCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCCAAATTTGCTGACGACGAGATTCAAAATCTCGTCTTGAAATTGCAATCTTTGCTCCCTCAGCTCAACCCTAAGCCCGACGACGATGACTCAGCGGTGTC
GGCGGCTGAGATTTTGGAGGAGACTTGTGATTACATAAAGAAATTGCAGAGGGAGGTGGATGATCTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACT
TTGAGATGGTTAAAGATCTTCTTTTCACTTAA
Protein sequenceShow/hide protein sequence
MASSKFADDEIQNLVLKLQSLLPQLNPKPDDDDSAVSAAEILEETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLFT