; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024111 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024111
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr10:561042..561353
RNA-Seq ExpressionLag0024111
SyntenyLag0024111
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137435.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia]3.7e-3293.24Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

XP_022923751.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita moschata]1.4e-3191.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPG+RH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

XP_023001341.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita maxima]1.4e-3191.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPG+RH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

XP_023519257.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucurbita pepo subsp. pepo]1.4e-3191.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPG+RH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

XP_038893557.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa hispida]1.1e-3191.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEG KPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

TrEMBL top hitse value%identityAlignment
A0A5A7T3B5 Pentatricopeptide repeat-containing protein2.8e-3089.19Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALC YELMKKEG KPDPVTFVGVLSACSHNGLVDEAYFHLNSMV+DYGIQPG RH  +ACL
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

A0A5D3BIJ5 Pentatricopeptide repeat-containing protein2.8e-3089.19Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALC YELMKKEG KPDPVTFVGVLSACSHNGLVDEAYFHLNSMV+DYGIQPG RH  +ACL
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

A0A6J1C6M8 pentatricopeptide repeat-containing protein At1g74600, chloroplastic1.8e-3293.24Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

A0A6J1E7L2 pentatricopeptide repeat-containing protein At1g74600, chloroplastic6.8e-3291.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPG+RH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

A0A6J1KIC5 pentatricopeptide repeat-containing protein At1g74600, chloroplastic6.8e-3291.89Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MIVSYA+HGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPG+RH  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

SwissProt top hitse value%identityAlignment
O23491 Pentatricopeptide repeat-containing protein At4g164704.2e-1541.24Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF------------LFACLDFIVISPWQEY
        +I  Y  HGK +E L  +E MK+EG +P+PVTF+ VL+AC+H GLVD+ + H  SM +DYGI+P  +H+            L    +F++ SP +E+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF------------LFACLDFIVISPWQEY

Q9CA56 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic1.7e-2472.86Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFL
        +I SYA+HGK  EAL VY LMK++G KPD VTFVGVLSACSH GLV+E+YFHLNSMVKDYGI+P  RH++
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFL

Q9FIB2 Putative pentatricopeptide repeat-containing protein At5g099501.2e-1455.71Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEG-IKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF
        MI  YA HG+G EAL ++E MK +G   PD VTFVGVLSACSH GL++E + H  SM   YG+ P   HF
Subjt:  MIVSYAEHGKGAEALCVYELMKKEG-IKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331704.1e-1858.11Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        M+V  A+HG+G E L +++ MK  GIKPD VTF+GVLSACSH+GLV EAY H+ SM  DYGI+P   H  ++CL
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

Q9SY02 Pentatricopeptide repeat-containing protein At4g027509.5e-1550Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MI  Y+ HG G  AL  +E MK+EG+KPD  T V VLSACSH GLVD+   +  +M +DYG+ P  +H  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

Arabidopsis top hitse value%identityAlignment
AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein1.2e-2572.86Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFL
        +I SYA+HGK  EAL VY LMK++G KPD VTFVGVLSACSH GLV+E+YFHLNSMVKDYGI+P  RH++
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFL

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.7e-1650Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        MI  Y+ HG G  AL  +E MK+EG+KPD  T V VLSACSH GLVD+   +  +M +DYG+ P  +H  +AC+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

AT4G16470.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-1641.24Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF------------LFACLDFIVISPWQEY
        +I  Y  HGK +E L  +E MK+EG +P+PVTF+ VL+AC+H GLVD+ + H  SM +DYGI+P  +H+            L    +F++ SP +E+
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF------------LFACLDFIVISPWQEY

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1958.11Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL
        M+V  A+HG+G E L +++ MK  GIKPD VTF+GVLSACSH+GLV EAY H+ SM  DYGI+P   H  ++CL
Subjt:  MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACL

AT5G09950.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-1655.71Show/hide
Query:  MIVSYAEHGKGAEALCVYELMKKEG-IKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF
        MI  YA HG+G EAL ++E MK +G   PD VTFVGVLSACSH GL++E + H  SM   YG+ P   HF
Subjt:  MIVSYAEHGKGAEALCVYELMKKEG-IKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTCAGTTATGCTGAACATGGGAAAGGTGCAGAAGCTTTATGTGTCTATGAACTTATGAAGAAAGAAGGAATTAAGCCTGATCCAGTCACCTTTGTGGGAGTTTT
ATCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCTTATTTCCACCTTAATTCGATGGTGAAAGATTATGGTATACAGCCAGGATATCGACATTTTTTATTTGCATGTC
TTGATTTCATTGTTATAAGTCCTTGGCAAGAATACCGAAGAACTACAGTTGCTCAAAAAGTTAGCAAAACAACAAAAGATGCTTTGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTCAGTTATGCTGAACATGGGAAAGGTGCAGAAGCTTTATGTGTCTATGAACTTATGAAGAAAGAAGGAATTAAGCCTGATCCAGTCACCTTTGTGGGAGTTTT
ATCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCTTATTTCCACCTTAATTCGATGGTGAAAGATTATGGTATACAGCCAGGATATCGACATTTTTTATTTGCATGTC
TTGATTTCATTGTTATAAGTCCTTGGCAAGAATACCGAAGAACTACAGTTGCTCAAAAAGTTAGCAAAACAACAAAAGATGCTTTGTGCTAA
Protein sequenceShow/hide protein sequence
MIVSYAEHGKGAEALCVYELMKKEGIKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHFLFACLDFIVISPWQEYRRTTVAQKVSKTTKDALC