; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024144 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024144
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationchr10:778292..782471
RNA-Seq ExpressionLag0024144
SyntenyLag0024144
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033982.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-0828.5Show/hide
Query:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR
        H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  
Subjt:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR

Query:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
        +R      TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.8e-0828.87Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

KAA0063375.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-0929.38Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNPESKRG-SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +  +P +  G  +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNPESKRG-SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-0828.5Show/hide
Query:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR
        H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  
Subjt:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR

Query:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
        +R      TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

TYK24981.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-0829.38Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+FGG+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein1.9e-0828.5Show/hide
Query:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR
        H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  
Subjt:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR

Query:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
        +R      TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

A0A5A7T725 Ty3/gypsy retrotransposon protein4.3e-0828.87Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

A0A5A7VBU7 Ty3/gypsy retrotransposon protein3.8e-0929.38Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNPESKRG-SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +  +P +  G  +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNPESKRG-SLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

A0A5D3C9P5 Ty3/gypsy retrotransposon protein1.9e-0828.5Show/hide
Query:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR
        H     E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  
Subjt:  HMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQR

Query:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
        +R      TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+F G+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  LRLRNGQRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

A0A5D3DMY9 Ty3/gypsy retrotransposon protein5.0e-0929.38Show/hide
Query:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG
        E  S+L+ WYQS+  G++ S     + R++     +VE   + +P IE  +A + K+I  +   ++ Q +  ++      I K     +R +  +R    
Subjt:  ESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRLRLRNG

Query:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE
          TSK T  +   P  ++   +  +  ++R +  ++ K KK +MP+FGG+ PD WLFRA +YF I  L+D E++  A ISF    L W +  +E
Subjt:  QRTSKETGQKQKNP-ESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGS-PDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAAGACTTGTGAAAAATGAGAACTGGAAAGACGAGGTCAAGAATGAACGTTTGATGAAATATTTGGATAAACTACTTTCTTGGCGGAGGAGACCAAAAGACAT
GGGGTATTTTCATCCACTAAATCTGTATTCAAGGATCAACCACTTTTCTTCAATTGCAAAACAAAGGCACCTTAGGTTGCATCAGTGGGTTGGAGACTGGGAAGAGGGTG
GATCCCATTTGGTTAAATGGGAGATGGTGGTGAATCCCGTCCAGCTTAAAGAAACTGACAGCCTCTGGTATAGAATGATTGATCATGACTCGAAGGGTTGTGGTACCCAC
GATCTTGAGTATTCAATGGAGTTGGATCATATGGTGGGTTATGTCGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGT
CTCAAGGCCAGATGGAAGAATGGATGGACAATCCGAGAAGAGCGTTGAGGCCATGAAGGAAAATATACCAAAGATCGAAAGGACAGTAGCCAAGATTAACAAGAATATTG
AACGTTTGTTTAAGATCCTGGAAGATCAGAGAGAAACAATAGAACTTTTAGAGGCATGGTCTTTTATAAAAAAAAAAAGATCCTGGAAGATCAGAGGCAACCAACGGTTG
AGACTCAGAAACGGGCAACGAACCAGCAAAGAGACCGGCCAGAAGCAAAAAAATCCTGAATCGAAGAGAGGGTCCTTGAGTGGACAAGAAATGCAGAAAAGAGAGATCTA
TTTTGAAAAACACAAGTTAAAGAAAAACGACATGCCCATTTTTGGAGGTTCCCCGGATGATTGGTTGTTTCGGGCGGCACAATATTTCACTATTCAAAGGTTGTCTGATG
AAGAAAAAGTGCTGGCGGCGGCTATTTCCTTCACTGAGGCGGTGTTGCGATGGCTTCAATGGGGCAAGGAACCGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGAAGACTTGTGAAAAATGAGAACTGGAAAGACGAGGTCAAGAATGAACGTTTGATGAAATATTTGGATAAACTACTTTCTTGGCGGAGGAGACCAAAAGACAT
GGGGTATTTTCATCCACTAAATCTGTATTCAAGGATCAACCACTTTTCTTCAATTGCAAAACAAAGGCACCTTAGGTTGCATCAGTGGGTTGGAGACTGGGAAGAGGGTG
GATCCCATTTGGTTAAATGGGAGATGGTGGTGAATCCCGTCCAGCTTAAAGAAACTGACAGCCTCTGGTATAGAATGATTGATCATGACTCGAAGGGTTGTGGTACCCAC
GATCTTGAGTATTCAATGGAGTTGGATCATATGGTGGGTTATGTCGAATCCAGAAGTATCTTATCAAAGTGGTATCAGAGCGTTCATCTTGGGGAAGACACGAGCCACGT
CTCAAGGCCAGATGGAAGAATGGATGGACAATCCGAGAAGAGCGTTGAGGCCATGAAGGAAAATATACCAAAGATCGAAAGGACAGTAGCCAAGATTAACAAGAATATTG
AACGTTTGTTTAAGATCCTGGAAGATCAGAGAGAAACAATAGAACTTTTAGAGGCATGGTCTTTTATAAAAAAAAAAAGATCCTGGAAGATCAGAGGCAACCAACGGTTG
AGACTCAGAAACGGGCAACGAACCAGCAAAGAGACCGGCCAGAAGCAAAAAAATCCTGAATCGAAGAGAGGGTCCTTGAGTGGACAAGAAATGCAGAAAAGAGAGATCTA
TTTTGAAAAACACAAGTTAAAGAAAAACGACATGCCCATTTTTGGAGGTTCCCCGGATGATTGGTTGTTTCGGGCGGCACAATATTTCACTATTCAAAGGTTGTCTGATG
AAGAAAAAGTGCTGGCGGCGGCTATTTCCTTCACTGAGGCGGTGTTGCGATGGCTTCAATGGGGCAAGGAACCGTTCTAG
Protein sequenceShow/hide protein sequence
MEGRLVKNENWKDEVKNERLMKYLDKLLSWRRRPKDMGYFHPLNLYSRINHFSSIAKQRHLRLHQWVGDWEEGGSHLVKWEMVVNPVQLKETDSLWYRMIDHDSKGCGTH
DLEYSMELDHMVGYVESRSILSKWYQSVHLGEDTSHVSRPDGRMDGQSEKSVEAMKENIPKIERTVAKINKNIERLFKILEDQRETIELLEAWSFIKKKRSWKIRGNQRL
RLRNGQRTSKETGQKQKNPESKRGSLSGQEMQKREIYFEKHKLKKNDMPIFGGSPDDWLFRAAQYFTIQRLSDEEKVLAAAISFTEAVLRWLQWGKEPF