; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024145 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024145
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:782517..783769
RNA-Seq ExpressionLag0024145
SyntenyLag0024145
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW39682.1 Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]9.3e-1445.36Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL ARQ  TV  +R  FE L  P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA  +   PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
RVW41094.1 hypothetical protein CK203_069772 [Vitis vinifera]6.0e-1343.3Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL  RQ  T+  +R  FE L+ P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA      PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
RVW50870.1 Pentatricopeptide repeat-containing protein [Vitis vinifera]1.0e-1246.24Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
        QEGS+C +FL  RQ  TV  +R  FE L+ P   + +E+M+STF NGL PE++ E+   +   L   M+ AQRVED+NLA      PN  KST
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
RVX01070.1 hypothetical protein CK203_022817 [Vitis vinifera]6.0e-1343.3Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL  RQ  T+  +R  FE L+ P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA      PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
RVX19672.1 hypothetical protein CK203_005212 [Vitis vinifera]4.6e-1345.16Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
        QEGS+C +FL  RQ  TV  +R  FE L+ P   +++++M+STF NGL  E++ E+   +P  L   M+ AQRVED+NLA  +   PN+ KST
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
TrEMBL top hitse value%identityAlignment
A0A438DW91 Retrovirus-related Pol polyprotein from transposon 2974.5e-1445.36Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL ARQ  TV  +R  FE L  P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA  +   PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
A0A438E000 Retrotrans_gag domain-containing protein2.9e-1343.3Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL  RQ  T+  +R  FE L+ P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA      PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
A0A438ET29 Pentatricopeptide repeat-containing protein5.0e-1346.24Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
        QEGS+C +FL  RQ  TV  +R  FE L+ P   + +E+M+STF NGL PE++ E+   +   L   M+ AQRVED+NLA      PN  KST
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
A0A438IWF3 Retrotrans_gag domain-containing protein2.9e-1343.3Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
        QEGS+C +FL  RQ  T+  +R  FE L+ P   +++E+M+STF NGL PE++ E+   +P  L   M+ AQRVED+NLA      PN      ST+
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTR
A0A438KEQ5 Retrotrans_gag domain-containing protein2.2e-1345.16Show/hide
Query:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
        QEGS+C +FL  RQ  TV  +R  FE L+ P   +++++M+STF NGL  E++ E+   +P  L   M+ AQRVED+NLA  +   PN+ KST
Subjt:  QEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding7.1e-0431.82Show/hide
Query:  RQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKN
        +Q+ +V+E+RERFE L      L  + +++ F  GL P ++  V   +P  +   M  AQ +E+ N
Subjt:  RQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAGGCTCAATATGTGCGAGATTCCTAGTTGCACGACAAGACAACACTGTACAAGAGTTTAGAGAACGTTTTGAAGAATTATCAGCACCCCAGCCACACCTAAC
AGACGAGATTATGAAGAGCACGTTTTTTAATGGACTGGACCCAGAGGTAAAAGTTGAGGTGTTATCTTTTGAGCCAGTGGACCTAGCAACCTTCATGAAGGCGGCCCAAC
GCGTAGAGGATAAGAACTTGGCCTGCAACCTTAAAGCAAACCCAAACGAGGGAAAATCTACGAATTCAACCCGCCCCAATTATGAATTAGCAAAACCGAATCCAAAGGTA
ATTGATGCCACACCCATCAGGAAAATTTTTGTTTCAGGCCATTCCGAAGTGTTCAAGATCAAATTGGGGGAATTTCGATCATTTCCCAACAATCAAAGGTCAACACTGGG
CAAAGTCAACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAAGCCAAAATCCCCAGAGCAATGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGTCAACG
TCGAGCCGCTGTCCTTAGCATCTCGATGCTCTAGGACCGCTGGCGCTGAAATTCCAGCATCTCAACAATGGCCCAACAACTCGACGAGGTCTACCACGTGCGCACTTCTG
TATGCCTTTCGTCCGAAGCGTCTTGACGTTCTCGACTGCACTATATATATATTGTCTTATAAGAAACATCAAAGATATATAATAATCACAAAAGAAGGAGACAACCTAAG
GGTCGAGGGTGGAGATCGCCCTCGCCCAGACTCTAATACAAAAGAGCTTGCCAATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAAGGCTCAATATGTGCGAGATTCCTAGTTGCACGACAAGACAACACTGTACAAGAGTTTAGAGAACGTTTTGAAGAATTATCAGCACCCCAGCCACACCTAAC
AGACGAGATTATGAAGAGCACGTTTTTTAATGGACTGGACCCAGAGGTAAAAGTTGAGGTGTTATCTTTTGAGCCAGTGGACCTAGCAACCTTCATGAAGGCGGCCCAAC
GCGTAGAGGATAAGAACTTGGCCTGCAACCTTAAAGCAAACCCAAACGAGGGAAAATCTACGAATTCAACCCGCCCCAATTATGAATTAGCAAAACCGAATCCAAAGGTA
ATTGATGCCACACCCATCAGGAAAATTTTTGTTTCAGGCCATTCCGAAGTGTTCAAGATCAAATTGGGGGAATTTCGATCATTTCCCAACAATCAAAGGTCAACACTGGG
CAAAGTCAACCCAAAAGTCAACTTGTGGCCAACTCAAGAGTCAAGCCAAAATCCCCAGAGCAATGCTATGCTCAACACCGCAAGGCATTGTGCATCCAAAGGGGTCAACG
TCGAGCCGCTGTCCTTAGCATCTCGATGCTCTAGGACCGCTGGCGCTGAAATTCCAGCATCTCAACAATGGCCCAACAACTCGACGAGGTCTACCACGTGCGCACTTCTG
TATGCCTTTCGTCCGAAGCGTCTTGACGTTCTCGACTGCACTATATATATATTGTCTTATAAGAAACATCAAAGATATATAATAATCACAAAAGAAGGAGACAACCTAAG
GGTCGAGGGTGGAGATCGCCCTCGCCCAGACTCTAATACAAAAGAGCTTGCCAATCTTTAA
Protein sequenceShow/hide protein sequence
MQEGSICARFLVARQDNTVQEFRERFEELSAPQPHLTDEIMKSTFFNGLDPEVKVEVLSFEPVDLATFMKAAQRVEDKNLACNLKANPNEGKSTNSTRPNYELAKPNPKV
IDATPIRKIFVSGHSEVFKIKLGEFRSFPNNQRSTLGKVNPKVNLWPTQESSQNPQSNAMLNTARHCASKGVNVEPLSLASRCSRTAGAEIPASQQWPNNSTRSTTCALL
YAFRPKRLDVLDCTIYILSYKKHQRYIIITKEGDNLRVEGGDRPRPDSNTKELANL