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Lag0024154 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024154
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box protein
Genome locationchr10:847962..848328
RNA-Seq ExpressionLag0024154
SyntenyLag0024154
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044508 - F-box protein At5g50450/At1g67340-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584151.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2277.22Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN     S+ R   C  R P
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
KAG7019742.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2277.22Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN     S+ R   C  R P
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
XP_022923648.1 F-box protein At5g50450-like [Cucurbita moschata]3.2e-2291.8Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
XP_023001353.1 F-box protein At1g67340-like [Cucurbita maxima]1.4e-2277.22Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN     S+ R   C  R P
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
XP_023519168.1 F-box protein At5g50450-like [Cucurbita pepo subsp. pepo]1.4e-2277.22Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN     S+ R   C  R P
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
TrEMBL top hitse value%identityAlignment
A0A6J1C663 F-box protein At1g673407.7e-2278.38Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTC
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N +EGRRLLIEANAREL SI+N     S  R  TC
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTC
A0A6J1EA77 F-box protein At5g50450-like1.6e-2291.8Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
A0A6J1GUJ3 F-box protein At5g504501.7e-2190.16Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
        SDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
A0A6J1JZ31 F-box protein At5g50450-like1.7e-2190.16Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
        SDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITN
A0A6J1KQ99 F-box protein At1g67340-like7.0e-2377.22Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
        SDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SITN     S+ R   C  R P
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIP
SwissProt top hitse value%identityAlignment
Q9FK27 F-box protein At5g504509.1e-2080.36Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANAREL
        +DKNLR GVALC R+AYLGH+DAL ELGHCLQDGYGV  + SEGRRLLI+ANAREL
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANAREL
Q9FYF9 F-box protein At1g673409.1e-2058.75Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIPP
        +DK+LR GVALC RAA+LGH+DAL ELGHCLQDGYGV +N SEGRR L++ANAREL ++ +  S +        L + PP
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIPP
Arabidopsis top hitse value%identityAlignment
AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger6.5e-2158.75Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIPP
        +DK+LR GVALC RAA+LGH+DAL ELGHCLQDGYGV +N SEGRR L++ANAREL ++ +  S +        L + PP
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIPP
AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger6.5e-2180.36Show/hide
Query:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANAREL
        +DKNLR GVALC R+AYLGH+DAL ELGHCLQDGYGV  + SEGRRLLI+ANAREL
Subjt:  SDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANAREL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAGACGGCGGAAACCCAGAAAGAAAACTACGACGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCT
TTGTGAACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAA
ATCCTCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGCCTCCAACGGATTCCGCCGGATCGCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAGACGGCGGAAACCCAGAAAGAAAACTACGACGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCT
TTGTGAACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAA
ATCCTCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGCCTCCAACGGATTCCGCCGGATCGCTCCTAA
Protein sequenceShow/hide protein sequence
MPRRRKPRKKTTTSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITNPPSAVSIARATTCLQRIPPDRS