; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024155 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024155
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr10:853809..854828
RNA-Seq ExpressionLag0024155
SyntenyLag0024155
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-3938.23Show/hide
Query:  MSERVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAF--SRN---------------------
        + ERV EL++SQ T+L + N M+EDFRAT++ +R  +A +N RL+  MR + NQ P       +++K+PEPK F  +RN                     
Subjt:  MSERVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAF--SRN---------------------

Query:  ----LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG------------------------------
            +N+W+ LK+ELR+QFFP+N E + RRKLRE KHT  IREYVK F+ +MLDIR MSEKDK+FCFVEG                              
Subjt:  ----LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG------------------------------

Query:  -GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNK-------HETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPNLAALTALQASVQS
          DS   R++    + G++  RP+  K  G D +       H++++    RGP   ++    P +CF+CKGPH   ECPN  A  A QAS+ S
Subjt:  -GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNK-------HETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPNLAALTALQASVQS

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]3.6e-5742.51Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R+ ELN S + M+ LFNEM EDF+ TI+TLR  M  ++TR+N TMR V NQ PNQ +   NK+KVPEPK F+ N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---
                                       +NSW+DLKKELR QFFP+N EF+ARRKLREL+HT  IR+YVK FSAVM+DIR MSEKDK+F F++G   
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---

Query:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN
                                     +    +K    P  GN+ F+P   K  G D + +  + GPSRGPYP   N     + FLCKGPHR+ ECP+
Subjt:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN

Query:  LAALTALQASVQSCNEPKPEVGCNKNQ
         AALTALQASVQSCNEP+ E  C K +
Subjt:  LAALTALQASVQSCNEPKPEVGCNKNQ

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]1.0e-5642.09Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R+ ELN S +TM+ LFNEM EDF+ TI+TLR  M  ++TR+N TMR V NQ PNQ +   NK+KVPEPK F+ N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---
                                       +NSW+DLKKELR QFF +N EF+ARRKLREL+HT  IR+YVK FSAVMLDIR MSEKDK+F F+EG   
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---

Query:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN
                                     +    +K    P  GN+ F+P   K  G D +    + GPSRGPYP   N   P +CFLC+GPH++ ECP+
Subjt:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN

Query:  LAALTALQASVQSCNEPKPEVGCNKNQRKRRTHPG
         AALTALQASVQSCNEP+    C K + +     G
Subjt:  LAALTALQASVQSCNEPKPEVGCNKNQRKRRTHPG

XP_022975176.1 uncharacterized protein LOC111474215 [Cucurbita maxima]6.8e-4034.02Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R  E +  Q TM+ LFN + ++FR TI+ ++  MA M TR+  TM+ VEN T  Q +   NK++ PEP+AF  N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----
                                       ++SWEDLKKELR QF PEN   +A  KL  LKHT  IR+YV+ FS +MLDIR  SEKDK+F F+     
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----

Query:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC
                                   G ++  QR+  P PN G +P++P      +  +P G        TD   + + +G SRGPY  R++PT P  C
Subjt:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC

Query:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ
         LCKGPH++  CP+ A+LTALQ S+Q  N+ K E   +K +
Subjt:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ

XP_022975516.1 uncharacterized protein LOC111474945, partial [Cucurbita maxima]1.1e-4034.31Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R  E +  Q TM+ LFN + ++FR TI+ ++  MA M TR+  TM+ VEN T  Q +   NK++ PEP+AF  N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----
                                       ++SWEDLKKELR QF PEN E +A  KL  LKHT  IR+YV+ FS +MLDIR  SEKDK+F F+     
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----

Query:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC
                                   G ++  QR+  P PN G +P++P      +  +P G        TD   + + +G SRGPY  R++PT P  C
Subjt:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC

Query:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ
         LCKGPH++  CP+ A+LTALQ S+Q  N+ K E   +K +
Subjt:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ

TrEMBL top hitse value%identityAlignment
A0A5D3C9P8 Reverse transcriptase9.6e-4038.23Show/hide
Query:  MSERVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAF--SRN---------------------
        + ERV EL++SQ T+L + N M+EDFRAT++ +R  +A +N RL+  MR + NQ P       +++K+PEPK F  +RN                     
Subjt:  MSERVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAF--SRN---------------------

Query:  ----LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG------------------------------
            +N+W+ LK+ELR+QFFP+N E + RRKLRE KHT  IREYVK F+ +MLDIR MSEKDK+FCFVEG                              
Subjt:  ----LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG------------------------------

Query:  -GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNK-------HETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPNLAALTALQASVQS
          DS   R++    + G++  RP+  K  G D +       H++++    RGP   ++    P +CF+CKGPH   ECPN  A  A QAS+ S
Subjt:  -GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNK-------HETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPNLAALTALQASVQS

A0A6J1D906 Reverse transcriptase1.3e-5742.81Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R+ ELN S + M+ LFNEM EDF+ TI+TLR  M  ++TR+N TMR V NQ PNQ +   NK+KVPEPK F+ N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---
                                       +NSW+DLKKELR QFFP+N EF+ARRKLREL+HT  IR+YVK FSAVM+DIR MSEKDK+F F+EG   
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---

Query:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN
                                     +    +K    P  GN+ F+P   K  G D + +  + GPSRGPYP   N     + FLCKGPHR+ ECP+
Subjt:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN

Query:  LAALTALQASVQSCNEPKPEVGCNKNQ
         AALTALQASVQSCNEP+ E  C K +
Subjt:  LAALTALQASVQSCNEPKPEVGCNKNQ

A0A6J1DK29 uncharacterized protein LOC1110218295.1e-5742.09Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R+ ELN S +TM+ LFNEM EDF+ TI+TLR  M  ++TR+N TMR V NQ PNQ +   NK+KVPEPK F+ N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---
                                       +NSW+DLKKELR QFF +N EF+ARRKLREL+HT  IR+YVK FSAVMLDIR MSEKDK+F F+EG   
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEG---

Query:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN
                                     +    +K    P  GN+ F+P   K  G D +    + GPSRGPYP   N   P +CFLC+GPH++ ECP+
Subjt:  ----------------------------GDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPN

Query:  LAALTALQASVQSCNEPKPEVGCNKNQRKRRTHPG
         AALTALQASVQSCNEP+    C K + +     G
Subjt:  LAALTALQASVQSCNEPKPEVGCNKNQRKRRTHPG

A0A6J1IDF7 uncharacterized protein LOC1114742153.3e-4034.02Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R  E +  Q TM+ LFN + ++FR TI+ ++  MA M TR+  TM+ VEN T  Q +   NK++ PEP+AF  N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----
                                       ++SWEDLKKELR QF PEN   +A  KL  LKHT  IR+YV+ FS +MLDIR  SEKDK+F F+     
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----

Query:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC
                                   G ++  QR+  P PN G +P++P      +  +P G        TD   + + +G SRGPY  R++PT P  C
Subjt:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC

Query:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ
         LCKGPH++  CP+ A+LTALQ S+Q  N+ K E   +K +
Subjt:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ

A0A6J1IEF9 uncharacterized protein LOC1114749455.1e-4134.31Show/hide
Query:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------
        R  E +  Q TM+ LFN + ++FR TI+ ++  MA M TR+  TM+ VEN T  Q +   NK++ PEP+AF  N                          
Subjt:  RVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRN--------------------------

Query:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----
                                       ++SWEDLKKELR QF PEN E +A  KL  LKHT  IR+YV+ FS +MLDIR  SEKDK+F F+     
Subjt:  -------------------------------LNSWEDLKKELRAQFFPENDEFIARRKLRELKHTRGIREYVKHFSAVMLDIRYMSEKDKLFCFVE----

Query:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC
                                   G ++  QR+  P PN G +P++P      +  +P G        TD   + + +G SRGPY  R++PT P  C
Subjt:  ---------------------------GGDSIPQRKYIPPPNNGNQPFRP------TYQKPRG--------TDNKHETSSSGPSRGPYPPRSNPTWPPTC

Query:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ
         LCKGPH++  CP+ A+LTALQ S+Q  N+ K E   +K +
Subjt:  FLCKGPHRLHECPNLAALTALQASVQSCNEPKPEVGCNKNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGCGTGTCAATGAGTTGAATACATCCCAAACAACTATGTTGTGGTTGTTCAATGAGATGAACGAAGACTTTAGAGCCACCATTGAAACCTTGAGAGGTGGGAT
GGCTTTGATGAATACACGACTGAATTTCACCATGCGAGTAGTTGAGAATCAGACCCCGAACCAAGTGCACGAGGTACATAACAAGATTAAGGTCCCGGAACCCAAGGCAT
TCAGTAGGAACCTTAACTCATGGGAAGACCTCAAGAAAGAGTTGAGGGCACAGTTCTTCCCCGAAAACGATGAATTTATAGCAAGACGCAAGCTTCGTGAGTTGAAACAC
ACTAGAGGGATAAGGGAATATGTAAAGCACTTTTCTGCTGTGATGCTCGATATCCGTTATATGTCCGAGAAGGACAAATTGTTTTGTTTCGTTGAAGGTGGTGACTCAAT
CCCTCAAAGGAAGTACATACCGCCGCCAAACAATGGGAATCAGCCTTTTAGGCCCACGTATCAGAAACCTAGAGGGACAGACAATAAGCATGAGACCTCTTCCTCAGGTC
CTTCTCGAGGGCCCTATCCACCGAGGTCGAACCCAACATGGCCCCCGACTTGTTTCCTGTGCAAGGGGCCCCATAGACTACACGAATGTCCGAATCTAGCTGCTCTTACT
GCACTTCAAGCCTCGGTGCAATCCTGTAATGAACCTAAGCCCGAAGTTGGGTGCAACAAAAATCAAAGGAAGAGGAGAACACACCCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGCGTGTCAATGAGTTGAATACATCCCAAACAACTATGTTGTGGTTGTTCAATGAGATGAACGAAGACTTTAGAGCCACCATTGAAACCTTGAGAGGTGGGAT
GGCTTTGATGAATACACGACTGAATTTCACCATGCGAGTAGTTGAGAATCAGACCCCGAACCAAGTGCACGAGGTACATAACAAGATTAAGGTCCCGGAACCCAAGGCAT
TCAGTAGGAACCTTAACTCATGGGAAGACCTCAAGAAAGAGTTGAGGGCACAGTTCTTCCCCGAAAACGATGAATTTATAGCAAGACGCAAGCTTCGTGAGTTGAAACAC
ACTAGAGGGATAAGGGAATATGTAAAGCACTTTTCTGCTGTGATGCTCGATATCCGTTATATGTCCGAGAAGGACAAATTGTTTTGTTTCGTTGAAGGTGGTGACTCAAT
CCCTCAAAGGAAGTACATACCGCCGCCAAACAATGGGAATCAGCCTTTTAGGCCCACGTATCAGAAACCTAGAGGGACAGACAATAAGCATGAGACCTCTTCCTCAGGTC
CTTCTCGAGGGCCCTATCCACCGAGGTCGAACCCAACATGGCCCCCGACTTGTTTCCTGTGCAAGGGGCCCCATAGACTACACGAATGTCCGAATCTAGCTGCTCTTACT
GCACTTCAAGCCTCGGTGCAATCCTGTAATGAACCTAAGCCCGAAGTTGGGTGCAACAAAAATCAAAGGAAGAGGAGAACACACCCAGGATGA
Protein sequenceShow/hide protein sequence
MSERVNELNTSQTTMLWLFNEMNEDFRATIETLRGGMALMNTRLNFTMRVVENQTPNQVHEVHNKIKVPEPKAFSRNLNSWEDLKKELRAQFFPENDEFIARRKLRELKH
TRGIREYVKHFSAVMLDIRYMSEKDKLFCFVEGGDSIPQRKYIPPPNNGNQPFRPTYQKPRGTDNKHETSSSGPSRGPYPPRSNPTWPPTCFLCKGPHRLHECPNLAALT
ALQASVQSCNEPKPEVGCNKNQRKRRTHPG