CuGenDBv2

Gene ID	Lag0024160
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	MYND-type domain-containing protein
Genome location	chr10:882978..885794
RNA-Seq Expression	Lag0024160
Synteny	Lag0024160
Gene Ontology terms	GO:0005515 - protein binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR044508 - F-box protein At5g50450/At1g67340-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573130.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-50

77.21

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SIT SSLRRLNCS D  + TDS+GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+G NIPAPE HP NQFLRDWF SG GFIAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

XP_008439699.1 PREDICTED: F-box protein At1g67340 [Cucumis melo]

2.9e-50

76.47

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEGRRLLIEANAREL  IT SSLRRL+CS    S TDS GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+GCN PAPEAHP NQFLRDWFASG G IAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

XP_022955215.1 F-box protein At5g50450 [Cucurbita moschata]

2.2e-50

77.21

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SIT SSLRRLNCS D  + TDS+GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+G NIPAPE HP NQFLRDWF SG GFIAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

XP_022994416.1 F-box protein At5g50450-like [Cucurbita maxima]

9.8e-51

77.94

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SIT SSLRRLNCS D  S TDS+GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+G NIPAPE HP NQFLRDWF SG GFIAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

XP_038894785.1 F-box protein At1g67340 [Benincasa hispida]

9.8e-51

76.47

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEGRRLLIEANAREL SIT SSLRRL+CSGD  S  DS GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+GCN PA EAHP N+FLRDWFASG GF+AEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTV0 MYND-type domain-containing protein

2.4e-50

76.47

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEGRRLLIEANAREL  IT SSLRRL+CS    S TDS GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+GCN PAPEAHP NQFLRDWFASG G IAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

A0A1S3AZD5 F-box protein At1g67340

1.4e-50

76.47

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEGRRLLIEANAREL  IT SSLRRL+CS    S TDS GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+GCN PAPEAHP NQFLRDWFASG G IAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

A0A5A7UP50 F-box protein

1.4e-50

76.47

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAAYLGHIDAL ELGHCLQDGYGV +N SEGRRLLIEANAREL  IT SSLRRL+CS    S TDS GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+GCN PAPEAHP NQFLRDWFASG G IAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

A0A6J1GUJ3 F-box protein At5g50450

1.1e-50

77.21

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SIT SSLRRLNCS D  + TDS+GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+G NIPAPE HP NQFLRDWF SG GFIAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

A0A6J1JZ31 F-box protein At5g50450-like

4.8e-51

77.94

Show/hide

Query:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL
        L  L ++  +   G+KSDKNLR GVALCGRAA LGHIDAL ELGHCLQDGYGVA+N SEGRRLLIEANAREL SIT SSLRRLNCS D  S TDS+GSLL
Subjt:  LVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGSLL

Query:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
        SD+G NIPAPE HP NQFLRDWF SG GFIAEGLRL
Subjt:  SDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

SwissProt top hits

e value

%identity

Alignment

Q9FK27 F-box protein At5g50450

1.4e-31

54.35

Show/hide

Query:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGS
        P L  L++I  +   G+K+DKNLR GVALC R+AYLGH+DAL ELGHCLQDGYGV  + SEGRRLLI+ANAREL    +S L     SGD          
Subjt:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGS

Query:  LLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
         L+D    +P  E HPVN+FL++WF+SG   +AEGLR+
Subjt:  LLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

Q9FYF9 F-box protein At1g67340

1.8e-34

53.06

Show/hide

Query:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRR----LNCSGDHLSPTD
        P L  L +I  +   G+K+DK+LR GVALC RAA+LGH+DAL ELGHCLQDGYGV +N SEGRR L++ANAREL ++  S ++     L+ S        
Subjt:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRR----LNCSGDHLSPTD

Query:  SAGS----LLSDYGCNIPAPEAHPVNQFLRDWFA-SGCGFIAEGLRL
        + G     LLSD+GCN+PAPE HP N+FL DWFA  G     +GLRL
Subjt:  SAGS----LLSDYGCNIPAPEAHPVNQFLRDWFA-SGCGFIAEGLRL

Arabidopsis top hits

e value

%identity

Alignment

AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger

1.2e-35

53.06

Show/hide

Query:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRR----LNCSGDHLSPTD
        P L  L +I  +   G+K+DK+LR GVALC RAA+LGH+DAL ELGHCLQDGYGV +N SEGRR L++ANAREL ++  S ++     L+ S        
Subjt:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRR----LNCSGDHLSPTD

Query:  SAGS----LLSDYGCNIPAPEAHPVNQFLRDWFA-SGCGFIAEGLRL
        + G     LLSD+GCN+PAPE HP N+FL DWFA  G     +GLRL
Subjt:  SAGS----LLSDYGCNIPAPEAHPVNQFLRDWFA-SGCGFIAEGLRL

AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger

9.9e-33

54.35

Show/hide

Query:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGS
        P L  L++I  +   G+K+DKNLR GVALC R+AYLGH+DAL ELGHCLQDGYGV  + SEGRRLLI+ANAREL    +S L     SGD          
Subjt:  PGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKSSLRRLNCSGDHLSPTDSAGS

Query:  LLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL
         L+D    +P  E HPVN+FL++WF+SG   +AEGLR+
Subjt:  LLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGACCCAATGAGGAGACAAATCAAAAGTTTCCAAAGACAATCTTGCACAAGAGAGTTTCTATCCCACCTAAAGAAGACTTTACTAACCCGGGATTGGTTTACTTAAC
TCTCATCCTATCTTCCCCCTACACTGGCACTAAGAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCTCGGCCATATCGACGCGCTTTGTG
AACTAGGTCACTGCCTTCAAGACGGTTACGGCGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCGTGAGCTCGAGTCCATAACAAAATCC
TCCCTCCGCCGTCTCAATTGCTCGGGCGACCACCTGTCTCCAACGGATTCCGCCGGATCGCTCCTAAGTGACTACGGTTGCAACATTCCGGCGCCGGAGGCTCATCCGGT
AAACCAATTTCTAAGAGATTGGTTCGCATCGGGCTGTGGATTTATCGCTGAAGGACTGAGGCTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRPNEETNQKFPKTILHKRVSIPPKEDFTNPGLVYLTLILSSPYTGTKSDKNLRVGVALCGRAAYLGHIDALCELGHCLQDGYGVAENTSEGRRLLIEANARELESITKS
SLRRLNCSGDHLSPTDSAGSLLSDYGCNIPAPEAHPVNQFLRDWFASGCGFIAEGLRL

Lag0024160 (gene) of Sponge gourd (AG-4) v1 genome