; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024209 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024209
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionATP-dependent helicase ATRX
Genome locationchr10:1248197..1248613
RNA-Seq ExpressionLag0024209
SyntenyLag0024209
Gene Ontology termsGO:0000781 - chromosome, telomeric region (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0070615 - nucleosome-dependent ATPase activity (molecular function)
InterPro domainsIPR000330 - SNF2, N-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR038718 - SNF2-like, N-terminal domain superfamily
IPR044574 - ATPase ARIP4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020999.1 Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3083.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

XP_022937760.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]1.2e-3083.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

XP_022965424.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima]1.2e-3083.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

XP_022965425.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima]1.2e-3083.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

XP_023537143.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-3083.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

TrEMBL top hitse value%identityAlignment
A0A6J1FC49 ATP-dependent helicase ATRX5.9e-3183.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

A0A6J1FGU8 ATP-dependent helicase ATRX5.9e-3183.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

A0A6J1HLN1 ATP-dependent helicase ATRX5.9e-3183.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

A0A6J1HNN1 ATP-dependent helicase ATRX5.9e-3183.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

A0A6J1HQY8 ATP-dependent helicase ATRX5.9e-3183.54Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + +SG RF+WENIIQS+RKVKSGDK LGCILAHTM LGKTFQVIAF YTAMRNVDLGLRT +IVTPVNVLHNW+QEFF+
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

SwissProt top hitse value%identityAlignment
F4HW51 Protein CHROMATIN REMODELING 206.3e-3078.48Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + ++G RF+WENIIQSI +VKSGDK LGCILAHTM LGKTFQVIAF YTAMR VDLGL+T LIVTPVNVLHNW+ EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

P46100 Transcriptional regulator ATRX1.3e-1141.77Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + + G +F+W+   +S++K K    S GCILAH M LGKT QV++F +T +    L   T L+V P+N   NW  EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

Q61687 Transcriptional regulator ATRX2.2e-1141.77Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + + G +F+W+   +S+ K K    S GCILAH M LGKT QV++F +T +    L   T L+V P+N   NW  EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

Q7YQM3 Transcriptional regulator ATRX1.3e-1141.77Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + + G +F+W+   +S++K K    S GCILAH M LGKT QV++F +T +    L   T L+V P+N   NW  EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

Q7YQM4 Transcriptional regulator ATRX1.3e-1141.77Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + + G +F+W+   +S++K K    S GCILAH M LGKT QV++F +T +    L   T L+V P+N   NW  EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

Arabidopsis top hitse value%identityAlignment
AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.4e-3178.48Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + ++G RF+WENIIQSI +VKSGDK LGCILAHTM LGKTFQVIAF YTAMR VDLGL+T LIVTPVNVLHNW+ EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.4e-3178.48Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + ++G RF+WENIIQSI +VKSGDK LGCILAHTM LGKTFQVIAF YTAMR VDLGL+T LIVTPVNVLHNW+ EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.4e-3178.48Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + ++G RF+WENIIQSI +VKSGDK LGCILAHTM LGKTFQVIAF YTAMR VDLGL+T LIVTPVNVLHNW+ EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.4e-3178.48Show/hide
Query:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        + ++G RF+WENIIQSI +VKSGDK LGCILAHTM LGKTFQVIAF YTAMR VDLGL+T LIVTPVNVLHNW+ EF K
Subjt:  YSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK

AT3G42670.1 chromatin remodeling 381.7e-0637.33Show/hide
Query:  FLWENIIQSIRKV---KSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK
        FLW+N+  S+       S DK  GC+++HT   GKTF +IAF  + ++ +  G R  L++ P   L+ W +EF K
Subjt:  FLWENIIQSIRKV---KSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNVDLGLRTELIVTPVNVLHNWQQEFFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCAAGAAGTAGGTTTTCCTCCAAGAATCCATCAAGAACGTCGACCAATGCTCCAAGAATTCAACAATAATCCCTTATATAGTGGGAAATGGAGATTGAAACTTTC
TTGGAATGACATAATTTCAAGATTTAAGGAGAGAACGCAAGGGAAAGATTCATGGGACTATTCGATTTCTGGAACAAGATTTCTGTGGGAAAATATCATTCAATCAATAA
GGAAAGTGAAGTCTGGTGATAAAAGTCTTGGATGCATTCTTGCTCACACAATGGTTCTTGGTAAAACTTTTCAGGTTATAGCATTCTACTACACTGCCATGAGAAATGTG
GACTTGGGTTTACGAACAGAACTTATAGTCACCCCTGTTAATGTGTTGCATAATTGGCAGCAAGAATTCTTCAAGATTGGTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCAAGAAGTAGGTTTTCCTCCAAGAATCCATCAAGAACGTCGACCAATGCTCCAAGAATTCAACAATAATCCCTTATATAGTGGGAAATGGAGATTGAAACTTTC
TTGGAATGACATAATTTCAAGATTTAAGGAGAGAACGCAAGGGAAAGATTCATGGGACTATTCGATTTCTGGAACAAGATTTCTGTGGGAAAATATCATTCAATCAATAA
GGAAAGTGAAGTCTGGTGATAAAAGTCTTGGATGCATTCTTGCTCACACAATGGTTCTTGGTAAAACTTTTCAGGTTATAGCATTCTACTACACTGCCATGAGAAATGTG
GACTTGGGTTTACGAACAGAACTTATAGTCACCCCTGTTAATGTGTTGCATAATTGGCAGCAAGAATTCTTCAAGATTGGTATATAA
Protein sequenceShow/hide protein sequence
MVQEVGFPPRIHQERRPMLQEFNNNPLYSGKWRLKLSWNDIISRFKERTQGKDSWDYSISGTRFLWENIIQSIRKVKSGDKSLGCILAHTMVLGKTFQVIAFYYTAMRNV
DLGLRTELIVTPVNVLHNWQQEFFKIGI