; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024210 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024210
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr10:1256150..1256581
RNA-Seq ExpressionLag0024210
SyntenyLag0024210
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033505.1 peroxidase 64 [Cucumis melo var. makuwa]6.1e-1737.32Show/hide
Query:  RWATLDVPPLHCLLSEGHNLLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAI---TTVVGEPAILE
        R AT +      +L      +  +MV  +GVT V WK LT T      ++ IKGDPSLTKT++SLK + K+W   D+G+ +E +AI   ++V  +   ++
Subjt:  RWATLDVPPLHCLLSEGHNLLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAI---TTVVGEPAILE

Query:  VVPLSPNPPLIDRLLERYDDVFSIPTQLPPSREVDHRICLKD
        V  +   P  + ++L++Y DVF  P  L P RE++H ICLK+
Subjt:  VVPLSPNPPLIDRLLERYDDVFSIPTQLPPSREVDHRICLKD

KAA0057179.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L++++D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

KAA0068193.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

TrEMBL top hitse value%identityAlignment
A0A5A7V5H5 Ty3/gypsy retrotransposon protein3.8e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

A0A5D3BEL2 Ty3/gypsy retrotransposon protein3.8e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

A0A5D3D5G0 Ty3/gypsy retrotransposon protein2.2e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L++++D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

A0A5D3DC20 Transposon Tf2-1 polyprotein isoform X13.8e-1740.83Show/hide
Query:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF
        +L    + +LGVT   WK LTLT      K+ IKGDPSLTK +VSLK L KTW +HD G+L+E +++   + EP  L           +  +L+++ D+F
Subjt:  LLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLIDRLLERYDDVF

Query:  SIPTQLPPSREVDHRICLKD
          P +LPP R ++H+I LK+
Subjt:  SIPTQLPPSREVDHRICLKD

A0A5D3DST3 Peroxidase 642.9e-1737.32Show/hide
Query:  RWATLDVPPLHCLLSEGHNLLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAI---TTVVGEPAILE
        R AT +      +L      +  +MV  +GVT V WK LT T      ++ IKGDPSLTKT++SLK + K+W   D+G+ +E +AI   ++V  +   ++
Subjt:  RWATLDVPPLHCLLSEGHNLLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAI---TTVVGEPAILE

Query:  VVPLSPNPPLIDRLLERYDDVFSIPTQLPPSREVDHRICLKD
        V  +   P  + ++L++Y DVF  P  L P RE++H ICLK+
Subjt:  VVPLSPNPPLIDRLLERYDDVFSIPTQLPPSREVDHRICLKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGTTGTGACACTAGGCGTAACGGCTGTGGC
TTGGAAAACACTTACTCTAACCATCATGAGCGGGGATTCGAAAATGACCATTAAGGGTGACCCTTCACTAACCAAAACGAAGGTCTCCCTGAAGCAGTTGCGGAAAACAT
GGGGTAAGCATGACCAAGGGTTTTTAGTTGAACAAAAGGCGATTACAACTGTTGTAGGGGAACCCGCAATTTTAGAAGTTGTGCCCCTTTCTCCCAACCCACCATTGATT
GATCGATTACTTGAACGATATGATGATGTATTTTCGATTCCCACACAACTTCCACCATCAAGGGAGGTCGATCATCGCATCTGCCTTAAAGATGACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGTTGTGACACTAGGCGTAACGGCTGTGGC
TTGGAAAACACTTACTCTAACCATCATGAGCGGGGATTCGAAAATGACCATTAAGGGTGACCCTTCACTAACCAAAACGAAGGTCTCCCTGAAGCAGTTGCGGAAAACAT
GGGGTAAGCATGACCAAGGGTTTTTAGTTGAACAAAAGGCGATTACAACTGTTGTAGGGGAACCCGCAATTTTAGAAGTTGTGCCCCTTTCTCCCAACCCACCATTGATT
GATCGATTACTTGAACGATATGATGATGTATTTTCGATTCCCACACAACTTCCACCATCAAGGGAGGTCGATCATCGCATCTGCCTTAAAGATGACCAATAG
Protein sequenceShow/hide protein sequence
MARWATLDVPPLHCLLSEGHNLLSSSMVVTLGVTAVAWKTLTLTIMSGDSKMTIKGDPSLTKTKVSLKQLRKTWGKHDQGFLVEQKAITTVVGEPAILEVVPLSPNPPLI
DRLLERYDDVFSIPTQLPPSREVDHRICLKDDQ