CuGenDBv2

Gene ID	Lag0024296
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr10:1949329..1949784
RNA-Seq Expression	Lag0024296
Synteny	Lag0024296
Gene Ontology terms	NA
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

4.3e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-32

50.92

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Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLIN
        MD+S+S + S+   +E +L SPIVLL+NI NLI+++LDS+NYVLW FQL+  L+AHKLFG++DG+   P            NP+Y+ WF KDQAL+T+IN
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLIN

Query:  ATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        ATLSP ALAY VG TTS+Q+W+                LKSDLQ+I+K S ESI  Y++RI +
Subjt:  ATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-32

50.92

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLIN
        MD+S+S + S+   +E +L SPIVLL+NI NLI+++LDS+NYVLW FQL+  L+AHKLFG++DG+   P            NP+Y+ WF KDQAL+T+IN
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLIN

Query:  ATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        ATLSP ALAY VG TTS+Q+W+                LKSDLQ+I+K S ESI  Y++RI +
Subjt:  ATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

4.3e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

4.3e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

2.1e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

2.1e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

2.1e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

A0A5D3CLI6 T4.5

2.1e-29

47.31

Show/hide

Query:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI
        M +S+++  S+A   E+   SPI LL+NI NLI++RLDS+N+VLW FQL+  L+AHKL+G++DG+   P +       S    Q NP+YE W  KDQAL+
Subjt:  MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGIS----QPNPAYEAWFEKDQALI

Query:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        T+INATLSP ALAY VG T+S+Q+W                 LKSDLQ+I K   ESI  Y++RI +
Subjt:  TLINATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

A0A6J1D9L6 uncharacterized protein LOC111018892

3.5e-29

47.88

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Query:  SAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEI--KVEGISQP---------NPAYEAWFEKDQALITL
        S++  +++ L SPI LL+NI NL+++RLDS++++LW FQL+  L+AHKLFG++DGS+SAP++ +    E  SQP         NP +E W  KDQAL+TL
Subjt:  SAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEI--KVEGISQP---------NPAYEAWFEKDQALITL

Query:  INATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD
        INATLS  ALAY V   TS+Q+W                 LKSDLQSI K + ESI  YV+RI +
Subjt:  INATLSPSALAYAVGCTTSQQIWS---------------KLKSDLQSITKLSTESISGYVQRITD

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.1e-09

28.19

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Query:  AAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAY
        AA   E  L++  +L  N+SN+   +L S+NY++W+ Q+      ++L G+LDGS + P   I  +   + NP Y  W  +D+ + + +   +S S    
Subjt:  AAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAY

Query:  AVGCTTSQQIW---------------SKLKSDLQSITKLSTESISGYVQ
            TT+ QIW               ++L++ L+  TK  T++I  Y+Q
Subjt:  AVGCTTSQQIW---------------SKLKSDLQSITKLSTESISGYVQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.1e-09

31.37

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Query:  VLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAYAVGCTTSQQIWSK
        +L  N+SN+   +L S+NY++W+ Q+      ++L G+LDGS   P   I  + + + NP Y  W  +D+ + + I   +S S        TT+ QIW  
Subjt:  VLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAYAVGCTTSQQIWSK

Query:  LK
        L+
Subjt:  LK

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.7e-04

23.86

Show/hide

Query:  DSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAYAVGCTTSQQIWSKLK
        D  NYV W  +   FLR  K FG++DG++  P            +P Y+ W + +  ++  +  +++   L   +   T+ ++W  L+
Subjt:  DSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSPSALAYAVGCTTSQQIWSKLK

Sequences

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CDS sequence

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ATGGATACTTCGAGTTCAATCACGAAGTCTGCTGCGATTCCTTCAGAACAGTCTTTATCCTCTCCGATTGTTCTTCTCACAAACATTAGCAATTTGATCACCGTT
CGCTTGGATTCTTCAAACTATGTACTCTGGAATTTTCAGCTTTCTCCTTTTCTTCGTGCACACAAGCTTTTTGGTTATTTGGATGGTTCGATCTCGGCTCCGGCC
AAAGAAATCAAGGTTGAGGGAATCTCACAACCTAATCCTGCGTATGAAGCGTGGTTTGAGAAAGATCAAGCTTTGATTACGCTGATTAATGCTACTCTCTCGCCG
TCGGCTTTAGCGTATGCAGTTGGTTGCACTACCTCTCAACAGATCTGGTCGAAGCTCAAGTCTGATTTACAGAGCATCACCAAACTATCTACTGAGTCTATCAGT
GGCTATGTTCAACGAATTACAGATCAGCCAGTATGA

mRNA sequence

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Protein sequence

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MDTSSSITKSAAIPSEQSLSSPIVLLTNISNLITVRLDSSNYVLWNFQLSPFLRAHKLFGYLDGSISAPAKEIKVEGISQPNPAYEAWFEKDQALITLINATLSP
SALAYAVGCTTSQQIWSKLKSDLQSITKLSTESISGYVQRITDQPV

Lag0024296 (gene) of Sponge gourd (AG-4) v1 genome