CuGenDBv2

Gene ID	Lag0024383
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	U6 snRNA-associated Sm-like protein LSm8
Genome location	chr10:2654174..2660116
RNA-Seq Expression	Lag0024383
Synteny	Lag0024383
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005688 - U6 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR034103 - Sm-like protein Lsm8 IPR044642 - U6 snRNA-associated Sm-like protein Lsm1/8

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TXG46261.1 hypothetical protein EZV62_028239 [Acer yangbiense]

1.0e-27

80.46

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH----------CGELDEELDSNLDLSKLRAHPLKP
        M+SGPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTK+            GELDEELDS+LDLS LRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH----------CGELDEELDSNLDLSKLRAHPLKP

XP_004137538.1 sm-like protein LSM8 [Cucumis sativus]

4.6e-28

76.84

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

XP_011621662.1 sm-like protein LSM8 isoform X1 [Amborella trichopoda]

6.0e-28

75.79

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        M+SGPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

XP_022155134.1 sm-like protein LSM8 [Momordica charantia]

2.1e-28

77.89

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

XP_042494798.1 sm-like protein LSM8 [Macadamia integrifolia]

6.0e-28

75.79

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        M+SGPGLESLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LT86 U6 snRNA-associated Sm-like protein LSm8

2.2e-28

76.84

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

A0A1S3ATI1 U6 snRNA-associated Sm-like protein LSm8

2.2e-28

76.84

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

A0A6J1DPC5 U6 snRNA-associated Sm-like protein LSm8

1.0e-28

77.89

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

A0A6J1GT46 U6 snRNA-associated Sm-like protein LSm8

1.0e-28

77.89

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

A0A6J1K221 U6 snRNA-associated Sm-like protein LSm8

1.0e-28

77.89

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK+                    GELDEELDSNLDLSKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

SwissProt top hits

e value

%identity

Alignment

O95777 U6 snRNA-associated Sm-like protein LSm8

1.0e-14

49.43

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +                    GE+DEE DS LDL  +RA PL
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL

Q3ZCE0 U6 snRNA-associated Sm-like protein LSm8

1.0e-14

49.43

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +                    GE+DEE DS LDL  +RA PL
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL

Q5RCP3 U6 snRNA-associated Sm-like protein LSm8

1.0e-14

49.43

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +                    GE+DEE DS LDL  +RA PL
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL

Q6ZWM4 U6 snRNA-associated Sm-like protein LSm8

1.0e-14

49.43

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL
        LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +                    GE+DEE DS LDL  +RA PL
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPL

Q8VYI0 Sm-like protein LSM8

3.4e-26

68.42

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK+                    GELDEELD++LD SKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

Arabidopsis top hits

e value

%identity

Alignment

AT1G19120.1 Small nuclear ribonucleoprotein family protein

1.3e-04

37.5

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKHC
        L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV     +C
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKHC

AT1G65700.1 Small nuclear ribonucleoprotein family protein

2.4e-27

68.42

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK+                    GELDEELD++LD SKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

AT1G65700.2 Small nuclear ribonucleoprotein family protein

2.4e-27

68.42

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK+                    GELDEELD++LD SKLRAHPLKP
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH------------------CGELDEELDSNLDLSKLRAHPLKP

AT1G65700.3 Small nuclear ribonucleoprotein family protein

4.8e-23

47.83

Show/hide

Query:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH-----------------------------------------------
        MA+  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK H                                               
Subjt:  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKH-----------------------------------------------

Query:  --------------CGELDEELDSNLDLSKLRAHPLKP
                       GELDEELD++LD SKLRAHPLKP
Subjt:  --------------CGELDEELDSNLDLSKLRAHPLKP

AT3G14080.1 Small nuclear ribonucleoprotein family protein

5.0e-04

37.5

Show/hide

Query:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKHC
        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV   +++C
Subjt:  LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKHC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCAAACAATATCGGTAATCACAAATGACGGCCGCAATATCGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAA
TATTATCCTTGATGAATCTCATGAACGCGTTTATTCAACCAAGAAGCATTGTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATC
CTCTCAAGCCTAAAAGTGTCGTTCCTCTCGATTTCTTCTGTGAGTATATCTCTTCATTCTTCTTGTGGAAATCGTTAATTGCGTCTTTCGCTTTTTTTCTCTTCTCTGCG
TTGCTTTGGCCGCCGTCTACTCTTCTTTCGCATCTTTCTGATGATTTTTTGTCATCTGTGGATATCTTGAAGGCAATGACTACTGAAGAAGACTCTATCGAACAAGTTGC
TGCAGCATGTAAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAAGAATTGTTAAATGCTCCAGATGAGAAGACTTCTGGAGGGGAGGATAAAGAGAACGGTGCTACTGCAG
ATACTGAAGAAGAAATGAATGATGATGATGTCCTTCTTCCTCTGCCTCTAGCCACCTTCTTTTATCTTTGTAGCTACTGTCTGACCGTAGTTTTGTCATCAGACCTTTGC
AAAAATGCAAACATTCCACGGTTCATTCACTTCTCGTGTTGTGTTGGTGCAGCGAATCAGTTTCCAGATGACGTCAGAACTGCAAAGGTGCTTGTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKKHCGELDEELDSNLDLSKLRAHPLKPKSVVPLDFFCEYISSFFLWKSLIASFAFFLFSA
LLWPPSTLLSHLSDDFLSSVDILKAMTTEEDSIEQVAAACKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEMNDDDVLLPLPLATFFYLCSYCLTVVLSSDLC
KNANIPRFIHFSCCVGAANQFPDDVRTAKVLV

Lag0024383 (gene) of Sponge gourd (AG-4) v1 genome