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Lag0024434 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024434
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationchr10:3074023..3077364
RNA-Seq ExpressionLag0024434
SyntenyLag0024434
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050168.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]8.9e-2350.44Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKL+D++K+ +  +SF+G+ LNWY   ++R+ FKN  DLK +LL RFR  ++G++CG+FL ++QE++M +Y   F++L+ P+S L + V+E TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P IKAEV  C
Subjt:  GLDPVIKAEVVMC

KAA0059263.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.0e-2353.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKL++ +K++V  +SF+G ALNWY   ++R+ F +  DLK +LL RFR ++ G +CG+FL +KQETT+ +Y   F++LV PLSHL   V+E+TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P I+AEV  C
Subjt:  GLDPVIKAEVVMC

TYK10830.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.2e-2353.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYH-GKDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIH+L+D +K+IV  +SFEG ALNWY   ++R+ FKN  DLK +LL RFR  ++G +CG+FL ++QE++M +Y   F++L+ P+S L + V+E TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYH-GKDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P IKAEV  C
Subjt:  GLDPVIKAEVVMC

TYK18957.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-2253.98Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKLSD +K++V  +SF+G AL+WY   ++RE F N  +LK +LL RFR ++ GT+ G+FL VKQETT+ +Y   F++LV PLS + + V+E+ FMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P I+AEVV C
Subjt:  GLDPVIKAEVVMC

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]6.2e-2453.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKLSD +K++V  +SFEG ALNWY   ++R+ F    +LK +LL RFR +++G++CG+FL +KQ+TT+ +Y  +F+ L+ PL+ L + V+E TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P IKAEVV C
Subjt:  GLDPVIKAEVVMC

TrEMBL top hitse value%identityAlignment
A0A5A7U4I6 Transposon Tf2-1 polyprotein isoform X14.3e-2350.44Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKL+D++K+ +  +SF+G+ LNWY   ++R+ FKN  DLK +LL RFR  ++G++CG+FL ++QE++M +Y   F++L+ P+S L + V+E TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P IKAEV  C
Subjt:  GLDPVIKAEVVMC

A0A5D3BWP0 Transposon Ty3-G Gag-Pol polyprotein1.9e-2353.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKL++ +K++V  +SF+G ALNWY   ++R+ F +  DLK +LL RFR ++ G +CG+FL +KQETT+ +Y   F++LV PLSHL   V+E+TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P I+AEV  C
Subjt:  GLDPVIKAEVVMC

A0A5D3C468 Peroxidase 647.4e-2353.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKLSD +K++V  +SF+G ALNWY   ++RE F +  +LK +LL RFR ++ GT+ G+FL VKQE+T+  Y   F++LV PLS + + V+E+TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P I+AEV++C
Subjt:  GLDPVIKAEVVMC

A0A5D3CHI3 Transposon Tf2-1 polyprotein isoform X12.5e-2353.1Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYH-GKDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIH+L+D +K+IV  +SFEG ALNWY   ++R+ FKN  DLK +LL RFR  ++G +CG+FL ++QE++M +Y   F++L+ P+S L + V+E TFMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYH-GKDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P IKAEV  C
Subjt:  GLDPVIKAEVVMC

A0A5D3D5W7 Ty3/gypsy retrotransposon protein7.4e-2353.98Show/hide
Query:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN
        YFQIHKLSD +K++V  +SF+G AL+WY   ++RE F N  +LK +LL RFR ++ GT+ G+FL VKQETT+ +Y   F++LV PLS + + V+E+ FMN
Subjt:  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMN

Query:  GLDPVIKAEVVMC
        GL P I+AEVV C
Subjt:  GLDPVIKAEVVMC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTCATAGCGTCTATGCTGGAGCTTCCACCAACAGCTACTATCCATCTTGAGGACAAGGTGCATTTGCCTCCAAGGTCTGAGTATTGTGTGAGGAAAAGGAAAGT
TTCCAATGCTCTCGAATTGATTGTGAGAGTTTGTAAGCCTCAAGGCAAGTTTTCTAATAGAAATATCAATATATTGTATTTCCAAATCCATAAACTATCTGATATCAAGA
AACTTATTGTTGTTGTAGTTAGCTTTGAAGGAGTGGCACTGAATTGGTATCATGGGAAAGACAGAGAGCCCTTCAAGAATCAAAAAGATCTGAAACTTCAGTTGTTACAA
CGATTTAGAAGGAACAAGAAAGGAACATTGTGTGGGCGATTCCTAGTGGTGAAGCAGGAAACGACGATGACAAAGTACTGTGAGGATTTTGAAGAGTTGGTGCCACTATC
ACACCTGACCAATGAGGTATTGGAAAATACCTTCATGAATGGGCTTGACCCAGTCATCAAGGCAGAGGTGGTGATGTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTCATAGCGTCTATGCTGGAGCTTCCACCAACAGCTACTATCCATCTTGAGGACAAGGTGCATTTGCCTCCAAGGTCTGAGTATTGTGTGAGGAAAAGGAAAGT
TTCCAATGCTCTCGAATTGATTGTGAGAGTTTGTAAGCCTCAAGGCAAGTTTTCTAATAGAAATATCAATATATTGTATTTCCAAATCCATAAACTATCTGATATCAAGA
AACTTATTGTTGTTGTAGTTAGCTTTGAAGGAGTGGCACTGAATTGGTATCATGGGAAAGACAGAGAGCCCTTCAAGAATCAAAAAGATCTGAAACTTCAGTTGTTACAA
CGATTTAGAAGGAACAAGAAAGGAACATTGTGTGGGCGATTCCTAGTGGTGAAGCAGGAAACGACGATGACAAAGTACTGTGAGGATTTTGAAGAGTTGGTGCCACTATC
ACACCTGACCAATGAGGTATTGGAAAATACCTTCATGAATGGGCTTGACCCAGTCATCAAGGCAGAGGTGGTGATGTGCTAG
Protein sequenceShow/hide protein sequence
MGLIASMLELPPTATIHLEDKVHLPPRSEYCVRKRKVSNALELIVRVCKPQGKFSNRNINILYFQIHKLSDIKKLIVVVVSFEGVALNWYHGKDREPFKNQKDLKLQLLQ
RFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELVPLSHLTNEVLENTFMNGLDPVIKAEVVMC