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Lag0024480 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024480
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationchr10:3402200..3402628
RNA-Seq ExpressionLag0024480
SyntenyLag0024480
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF52023.1 conserved hypothetical protein [Ricinus communis]1.6e-3860.56Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFR---GEGEGIWRSNFG------KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLL
        M +EI+VS VLL VGIAVLV IHVCIVGRAFR     G+ I   +F       K++SNE+L+ LPC++YK  EKE  +  D  CVVCLE+F +G++C+LL
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFR---GEGEGIWRSNFG------KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLL

Query:  PNCRHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQEN
        PNC+HSFH QCIDSWL+KTPICPICRT    PK+GLVL+QE+
Subjt:  PNCRHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQEN

KAE8124192.1 hypothetical protein FH972_019098 [Carpinus fangiana]3.6e-3859.03Show/hide
Query:  LEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIW-------RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCR
        +E+VVS VLL VGI VLV+IH+CI GRAFRG    I         SN  KR+S  DLE+LPC++YK  EK S +    +C VCL++FKMG++CRLLPNCR
Subjt:  LEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIW-------RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCR

Query:  HSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGLRQI
        HSFHVQCIDSWLLKTPICPICRT    PKI ++L++E    R +
Subjt:  HSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGLRQI

XP_015868270.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba]2.1e-3862.96Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG-----IWRSNFG-KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNC
        MV+EIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS+ G KR+SNEDL+ LPC++Y  G  +  +    +C VCLE+FK GE+CRLLPNC
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG-----IWRSNFG-KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNC

Query:  RHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVL
        RHSFH  CIDSWLLKTPICPICRTCA  PK+ ++L
Subjt:  RHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVL

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]3.4e-6086.03Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV
        MV+EIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EGIWRSN GK LSN+DLEKLPCYEYK GEK+S NGVD ECVVCLE FK GERCRLLPNCRHSFHV
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV

Query:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL
        +CIDSWLLKTPICPICRTCA VPK GLVL+ +N  L
Subjt:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]1.2e-6086.76Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV
        MV+EIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EGIWRSN GK LSN+DLEKLPCYEYK GEK+S NGVD ECVVCLE FK GERCRLLPNCRHSFHV
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV

Query:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL
        +CIDSWLLKTPICPICRTCAAVPK GLVL+ +N  L
Subjt:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL

TrEMBL top hitse value%identityAlignment
A0A5N6RPJ5 RING-type domain-containing protein1.8e-3859.03Show/hide
Query:  LEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIW-------RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCR
        +E+VVS VLL VGI VLV+IH+CI GRAFRG    I         SN  KR+S  DLE+LPC++YK  EK S +    +C VCL++FKMG++CRLLPNCR
Subjt:  LEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIW-------RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCR

Query:  HSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGLRQI
        HSFHVQCIDSWLLKTPICPICRT    PKI ++L++E    R +
Subjt:  HSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGLRQI

A0A6J1GQW8 RING-H2 finger protein ATL56-like1.6e-6086.03Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV
        MV+EIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EGIWRSN GK LSN+DLEKLPCYEYK GEK+S NGVD ECVVCLE FK GERCRLLPNCRHSFHV
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV

Query:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL
        +CIDSWLLKTPICPICRTCA VPK GLVL+ +N  L
Subjt:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL

A0A6J1JUU5 RING-H2 finger protein ATL56-like5.6e-6186.76Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV
        MV+EIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EGIWRSN GK LSN+DLEKLPCYEYK GEK+S NGVD ECVVCLE FK GERCRLLPNCRHSFHV
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHV

Query:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL
        +CIDSWLLKTPICPICRTCAAVPK GLVL+ +N  L
Subjt:  QCIDSWLLKTPICPICRTCAAVPKIGLVLQQENGGL

A0A6P3YXL3 RING-H2 finger protein ATL74-like1.0e-3862.96Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG-----IWRSNFG-KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNC
        MV+EIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS+ G KR+SNEDL+ LPC++Y  G  +  +    +C VCLE+FK GE+CRLLPNC
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG-----IWRSNFG-KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNC

Query:  RHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVL
        RHSFH  CIDSWLLKTPICPICRTCA  PK+ ++L
Subjt:  RHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVL

B9RB46 RING-type domain-containing protein7.9e-3960.56Show/hide
Query:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFR---GEGEGIWRSNFG------KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLL
        M +EI+VS VLL VGIAVLV IHVCIVGRAFR     G+ I   +F       K++SNE+L+ LPC++YK  EKE  +  D  CVVCLE+F +G++C+LL
Subjt:  MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFR---GEGEGIWRSNFG------KRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLL

Query:  PNCRHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQEN
        PNC+HSFH QCIDSWL+KTPICPICRT    PK+GLVL+QE+
Subjt:  PNCRHSFHVQCIDSWLLKTPICPICRTCAAVPKIGLVLQQEN

SwissProt top hitse value%identityAlignment
Q6NML0 E3 ubiquitin-protein ligase ATL765.5e-1342.5Show/hide
Query:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC
        RS+  K +  + L   P   Y    + +  G+  ECV+CL  F  GE+ RLLP C H FHV+CID WL     CP CR C
Subjt:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC

Q8LBA0 NEP1-interacting protein-like 21.2e-1239.29Show/hide
Query:  EGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR
        E E ++     + LS + L KLPCY   +   E        C +CL+  K GE  R LP C H+FH+ C+D WL++   CPICR
Subjt:  EGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR

Q9LS99 RING-H2 finger protein ATL771.2e-1241.77Show/hide
Query:  SNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC
        S+  K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH++CID WL +   CP CR C
Subjt:  SNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC

Q9M0C3 RING-H2 finger protein ATL142.5e-1343.59Show/hide
Query:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR
        R  +   LS   +++LP  ++K  E  S+ G D +CVVC++ F+ G+ CR LP C H FH +C+D WL+K   CPICR
Subjt:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR

Q9ZV51 RING-H2 finger protein ATL565.5e-1336.7Show/hide
Query:  LLLVGIAVLVVIHVCI--VGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLL
        L+L+GIA ++++ + +  + R  R       R      LS+  ++KLP  ++K  E  +    + +CVVC + F+ G+ CR LP C H FH +C+D+WLL
Subjt:  LLLVGIAVLVVIHVCI--VGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLL

Query:  KTPICPICR
        K   CPICR
Subjt:  KTPICPICR

Arabidopsis top hitse value%identityAlignment
AT1G49210.1 RING/U-box superfamily protein3.9e-1442.5Show/hide
Query:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC
        RS+  K +  + L   P   Y    + +  G+  ECV+CL  F  GE+ RLLP C H FHV+CID WL     CP CR C
Subjt:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC

AT1G74410.1 RING/U-box superfamily protein8.7e-1439.29Show/hide
Query:  EGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR
        E E ++     + LS + L KLPCY   +   E        C +CL+  K GE  R LP C H+FH+ C+D WL++   CPICR
Subjt:  EGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR

AT2G18670.1 RING/U-box superfamily protein3.9e-1436.7Show/hide
Query:  LLLVGIAVLVVIHVCI--VGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLL
        L+L+GIA ++++ + +  + R  R       R      LS+  ++KLP  ++K  E  +    + +CVVC + F+ G+ CR LP C H FH +C+D+WLL
Subjt:  LLLVGIAVLVVIHVCI--VGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLL

Query:  KTPICPICR
        K   CPICR
Subjt:  KTPICPICR

AT3G18773.1 RING/U-box superfamily protein8.7e-1441.77Show/hide
Query:  SNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC
        S+  K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH++CID WL +   CP CR C
Subjt:  SNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTC

AT4G30370.1 RING/U-box superfamily protein1.7e-1443.59Show/hide
Query:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR
        R  +   LS   +++LP  ++K  E  S+ G D +CVVC++ F+ G+ CR LP C H FH +C+D WL+K   CPICR
Subjt:  RSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTGGAGATTGTGGTGTCGGCTGTTCTGCTGCTGGTGGGGATCGCTGTTTTGGTGGTGATTCATGTTTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGGGGAAGG
GATTTGGAGAAGCAATTTTGGAAAGAGACTTTCAAATGAGGACTTGGAGAAGCTTCCTTGTTATGAGTACAAATTGGGGGAAAAGGAGAGCAAAAATGGAGTGGATTTCG
AATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCGAATTGCAGGCACAGCTTCCATGTTCAGTGCATAGATTCATGGCTTTTGAAGACA
CCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTGCCAAAAATCGGCTTGGTTTTGCAGCAGGAAAATGGTGGGCTTCGCCAGATTCAGCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATTGGAGATTGTGGTGTCGGCTGTTCTGCTGCTGGTGGGGATCGCTGTTTTGGTGGTGATTCATGTTTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGGGGAAGG
GATTTGGAGAAGCAATTTTGGAAAGAGACTTTCAAATGAGGACTTGGAGAAGCTTCCTTGTTATGAGTACAAATTGGGGGAAAAGGAGAGCAAAAATGGAGTGGATTTCG
AATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAAGATGCAGATTGTTGCCGAATTGCAGGCACAGCTTCCATGTTCAGTGCATAGATTCATGGCTTTTGAAGACA
CCCATTTGCCCAATTTGCAGAACTTGTGCTGCTGTGCCAAAAATCGGCTTGGTTTTGCAGCAGGAAAATGGTGGGCTTCGCCAGATTCAGCTGAATTGA
Protein sequenceShow/hide protein sequence
MVLEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIWRSNFGKRLSNEDLEKLPCYEYKLGEKESKNGVDFECVVCLESFKMGERCRLLPNCRHSFHVQCIDSWLLKT
PICPICRTCAAVPKIGLVLQQENGGLRQIQLN