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Lag0024496 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024496
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:3541359..3541781
RNA-Seq ExpressionLag0024496
SyntenyLag0024496
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7016992.1 unnamed protein product [Microthlaspi erraticum]1.6e-0434.92Show/hide
Query:  LTANSGSQQLQIVALQPQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGY
        L+ N  S+  Q +  Q    +W PPP+G  K N D+++   +   G+GWI+RD HG ++++G+
Subjt:  LTANSGSQQLQIVALQPQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGY
CAB4274760.1 unnamed protein product [Prunus armeniaca]2.8e-0443.08Show/hide
Query:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        TA    Q LQ   LQP S+     W  P  G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
CAB4274761.1 unnamed protein product [Prunus armeniaca]2.8e-0443.08Show/hide
Query:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        TA    Q LQ   LQP S+     W  P  G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
CAB4303756.1 unnamed protein product [Prunus armeniaca]1.3e-0443.55Show/hide
Query:  SGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        +  Q LQ   LQP S+     W  PP G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  SGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
PQQ11302.1 uncharacterized protein Pyn_11853 [Prunus yedoensis var. nudiflora]2.1e-0450Show/hide
Query:  PQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        P    W  PP G  K+NCDA W    QRGG+GW+LRD  G  + AG
Subjt:  PQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
TrEMBL top hitse value%identityAlignment
A0A314YS27 Uncharacterized protein1.0e-0450Show/hide
Query:  PQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        P    W  PP G  K+NCDA W    QRGG+GW+LRD  G  + AG
Subjt:  PQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
A0A6D2HLC6 Uncharacterized protein7.9e-0534.92Show/hide
Query:  LTANSGSQQLQIVALQPQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGY
        L+ N  S+  Q +  Q    +W PPP+G  K N D+++   +   G+GWI+RD HG ++++G+
Subjt:  LTANSGSQQLQIVALQPQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGY
A0A6J5UE59 Reverse transcriptase domain-containing protein1.4e-0443.08Show/hide
Query:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        TA    Q LQ   LQP S+     W  P  G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
A0A6J5UF50 Uncharacterized protein1.4e-0443.08Show/hide
Query:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        TA    Q LQ   LQP S+     W  P  G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  TANSGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
A0A6J5WPU6 Reverse transcriptase domain-containing protein6.1e-0543.55Show/hide
Query:  SGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
        +  Q LQ   LQP S+     W  PP G  K+NCDA W+ +   GG+GW++RD  G  L AG
Subjt:  SGSQQLQIVALQPQSA----LWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0443.75Show/hide
Query:  SALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGYKCV
        S  W  PP    K N DATW   + R GIGWILR+  G  L  G + +
Subjt:  SALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGYKCV
AT4G29090.1 Ribonuclease H-like superfamily protein9.3e-0654.29Show/hide
Query:  WIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHG
        W PPP+   K N DATWN  ++R GIGW+LR+  G
Subjt:  WIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATATGTTTTTATTTATACTATTTGTTAAGTATGTTTATGGTTACAACCATCTTATAAGTTGGTATCACGAGCTCAATCGTTATCTGGCGCCTGTGGGATTAAC
CGCGAACTCGGGGAGCCAACAACTTCAAATTGTTGCTCTTCAACCTCAGTCGGCTTTGTGGATTCCTCCCCCAAATGGTACCTGCAAGCTAAATTGTGACGCCACTTGGA
ACACGAGACATCAAAGAGGTGGGATTGGATGGATTCTAAGAGATTGGCATGGTCGTCATTTGCAAGCGGGTTACAAATGCGTGAATCAACGATGGAAGATTAGCTGGCCT
GGAGGCGTTCTCCGTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATATGTTTTTATTTATACTATTTGTTAAGTATGTTTATGGTTACAACCATCTTATAAGTTGGTATCACGAGCTCAATCGTTATCTGGCGCCTGTGGGATTAAC
CGCGAACTCGGGGAGCCAACAACTTCAAATTGTTGCTCTTCAACCTCAGTCGGCTTTGTGGATTCCTCCCCCAAATGGTACCTGCAAGCTAAATTGTGACGCCACTTGGA
ACACGAGACATCAAAGAGGTGGGATTGGATGGATTCTAAGAGATTGGCATGGTCGTCATTTGCAAGCGGGTTACAAATGCGTGAATCAACGATGGAAGATTAGCTGGCCT
GGAGGCGTTCTCCGTTTGTGA
Protein sequenceShow/hide protein sequence
MVDMFLFILFVKYVYGYNHLISWYHELNRYLAPVGLTANSGSQQLQIVALQPQSALWIPPPNGTCKLNCDATWNTRHQRGGIGWILRDWHGRHLQAGYKCVNQRWKISWP
GGVLRL