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Lag0024499 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024499
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:3577589..3578710
RNA-Seq ExpressionLag0024499
SyntenyLag0024499
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]7.6e-2241.04Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TLTG  R WF ++ RKSI SFKELARA VTQF G W+R +P   L T+K +  ESLKDY+ RF  E LQVEG  D V L   I G++D +
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  LL---SKSSHRPMAEADHRPRSHRAVQNQKSDSTEARGHYQQIKVKAVPTHRSRYNNFRRTIRWTVRQGAKGR
        L+    K +    +EA  R +++ +V        + +G Y     K     R R    R  +RW      +GR
Subjt:  LL---SKSSHRPMAEADHRPRSHRAVQNQKSDSTEARGHYQQIKVKAVPTHRSRYNNFRRTIRWTVRQGAKGR

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]2.4e-1535.26Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TL+G AR WF ++ R SI SFK LA+A VTQF+G  SR +P   L T+K    ESL DY+ RF  E LQVEG  + V+L A +  ++D  
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  L---LSKSSHRPMAEADHR----------------PRSHRAVQN-------------QKSDSTEARGHYQQIK-VKAVPTHRSRYNNFRR
        L     K +    +EA  R                P   ++ QN             +K D +  + H + +K ++ +P H S+YN  +R
Subjt:  L---LSKSSHRPMAEADHR----------------PRSHRAVQN-------------QKSDSTEARGHYQQIK-VKAVPTHRSRYNNFRR

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]4.6e-1953.92Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TLTG AR WF ++ R SI SFKELA A VTQF+G   + KP   L T+K +  ESLK+Y+ RF  E LQVEG  D VAL A + G++D R
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  LL
        L+
Subjt:  LL

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.6e-1651.49Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TL G AR WF ++ R SI SFK LARA VTQF+G   R +P   L T+K    ESL+DY+ RF  E LQVEG  D V+L A + G++D  
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  L
        L
Subjt:  L

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.3e-1633.04Show/hide
Query:  CRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGRLLSK
        CR F LTL G AR+WF ++   SI SF +L+R   + F  A  R KP   L TVK +  E+L+DYI R+ NE+ QV+G+DDG+AL+  + GL+ G+L   
Subjt:  CRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGRLLSK

Query:  SSHRP-------MAEADHRPRSHRAVQN---QKSDSTEARGHYQQIKVKAV--PTHRSRYNNFRRTIRWTVRQGAKGRHSRGT--TRARRARNLQLLEGR
         S RP       +A A+    +    +N   +K +ST+ +      + + V  P    R N FR   R  VR       S+ T  T     R   L++ R
Subjt:  SSHRP-------MAEADHRPRSHRAVQN---QKSDSTEARGHYQQIKVKAV--PTHRSRYNNFRRTIRWTVRQGAKGRHSRGT--TRARRARNLQLLEGR

Query:  PGNFLGLP--------RLSPGECTHPWEDH
               P        R +P +  H  +DH
Subjt:  PGNFLGLP--------RLSPGECTHPWEDH

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166193.7e-2241.04Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TLTG  R WF ++ RKSI SFKELARA VTQF G W+R +P   L T+K +  ESLKDY+ RF  E LQVEG  D V L   I G++D +
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  LL---SKSSHRPMAEADHRPRSHRAVQNQKSDSTEARGHYQQIKVKAVPTHRSRYNNFRRTIRWTVRQGAKGR
        L+    K +    +EA  R +++ +V        + +G Y     K     R R    R  +RW      +GR
Subjt:  LL---SKSSHRPMAEADHRPRSHRAVQNQKSDSTEARGHYQQIKVKAVPTHRSRYNNFRRTIRWTVRQGAKGR

A0A6J1D7D2 uncharacterized protein LOC1110183071.1e-1535.26Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TL+G AR WF ++ R SI SFK LA+A VTQF+G  SR +P   L T+K    ESL DY+ RF  E LQVEG  + V+L A +  ++D  
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  L---LSKSSHRPMAEADHR----------------PRSHRAVQN-------------QKSDSTEARGHYQQIK-VKAVPTHRSRYNNFRR
        L     K +    +EA  R                P   ++ QN             +K D +  + H + +K ++ +P H S+YN  +R
Subjt:  L---LSKSSHRPMAEADHR----------------PRSHRAVQN-------------QKSDSTEARGHYQQIK-VKAVPTHRSRYNNFRR

A0A6J1DWY0 uncharacterized protein LOC1110252937.9e-1751.49Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TL G AR WF ++ R SI SFK LARA VTQF+G   R +P   L T+K    ESL+DY+ RF  E LQVEG  D V+L A + G++D  
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  L
        L
Subjt:  L

A0A6J1DZ49 uncharacterized protein LOC1110248512.2e-1953.92Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        EA  CR F+ TLTG AR WF ++ R SI SFKELA A VTQF+G   + KP   L T+K +  ESLK+Y+ RF  E LQVEG  D VAL A + G++D R
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  LL
        L+
Subjt:  LL

A0A6J1E1E7 uncharacterized protein LOC1110255482.0e-1548.51Show/hide
Query:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR
        +A  CR F+ TL G AR WF ++ R SI SFK LARA +TQF+G   R +P   L T+K    ESL DY+ RF  E LQ+EG  D V+L A + G++D  
Subjt:  EASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAWSRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGR

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCATAAAAAGGCCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGGTACGTACACAGGGAATAATGA
CAGAAAAAAGTCGGAGGCTCGGGCAAAGTTCGAGGCCGAGCAGGGCCAAAAGGGGCAAGAGCTATCCAAATGGCTGAAAGACGAAGCGAGCGGGTGCCGAGGCTTCGCGC
TAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCACGGAAGTCAATCGGTTCGTTTAAAGAATTGGCCCGAGCGCTTGTTACGCAATTCCTAGGAGCCTGG
AGCCGACAGAAGCCTCAGATCAAGTTGCAAACAGTAAAGCACGAACCTCGAGAAAGCTTGAAGGATTATATTAATAGATTTTGTAACGAAGTTTTGCAGGTAGAGGGCCA
TGACGATGGAGTTGCCTTGGCTGCTACGATCTTAGGTCTGCAGGATGGAAGACTGCTCAGCAAGAGCAGTCATCGGCCAATGGCCGAGGCCGACCATAGGCCAAGGAGCC
ACAGGGCTGTGCAGAACCAAAAGTCAGATTCGACAGAAGCTAGAGGCCATTACCAGCAAATCAAGGTAAAGGCGGTGCCAACCCACCGCTCGAGATACAACAATTTTAGA
AGGACCATCCGGTGGACAGTCAGGCAGGGAGCGAAAGGTCGCCATTCGAGAGGCACAACGAGAGCCCGAAGGGCAAGAAATTTACAGCTGCTTGAAGGGAGGCCCGGGAA
CTTCCTAGGTCTCCCTAGGCTTTCCCCAGGAGAGTGTACGCACCCCTGGGAAGACCACAACACTAGACCTTTTATCGTAGCTGAAGCGATTCAAGCCGAAAGGGAGATGC
TCTGCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCATAAAAAGGCCCGCAGAAGTTCGCCGCTAAAGACAGCGTCAGGTACGTACACAGGGAATAATGA
CAGAAAAAAGTCGGAGGCTCGGGCAAAGTTCGAGGCCGAGCAGGGCCAAAAGGGGCAAGAGCTATCCAAATGGCTGAAAGACGAAGCGAGCGGGTGCCGAGGCTTCGCGC
TAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCACGGAAGTCAATCGGTTCGTTTAAAGAATTGGCCCGAGCGCTTGTTACGCAATTCCTAGGAGCCTGG
AGCCGACAGAAGCCTCAGATCAAGTTGCAAACAGTAAAGCACGAACCTCGAGAAAGCTTGAAGGATTATATTAATAGATTTTGTAACGAAGTTTTGCAGGTAGAGGGCCA
TGACGATGGAGTTGCCTTGGCTGCTACGATCTTAGGTCTGCAGGATGGAAGACTGCTCAGCAAGAGCAGTCATCGGCCAATGGCCGAGGCCGACCATAGGCCAAGGAGCC
ACAGGGCTGTGCAGAACCAAAAGTCAGATTCGACAGAAGCTAGAGGCCATTACCAGCAAATCAAGGTAAAGGCGGTGCCAACCCACCGCTCGAGATACAACAATTTTAGA
AGGACCATCCGGTGGACAGTCAGGCAGGGAGCGAAAGGTCGCCATTCGAGAGGCACAACGAGAGCCCGAAGGGCAAGAAATTTACAGCTGCTTGAAGGGAGGCCCGGGAA
CTTCCTAGGTCTCCCTAGGCTTTCCCCAGGAGAGTGTACGCACCCCTGGGAAGACCACAACACTAGACCTTTTATCGTAGCTGAAGCGATTCAAGCCGAAAGGGAGATGC
TCTGCACATAA
Protein sequenceShow/hide protein sequence
MSTPRPMAEAEQKPNHKKARRSSPLKTASGTYTGNNDRKKSEARAKFEAEQGQKGQELSKWLKDEASGCRGFALTLTGLARQWFSKIPRKSIGSFKELARALVTQFLGAW
SRQKPQIKLQTVKHEPRESLKDYINRFCNEVLQVEGHDDGVALAATILGLQDGRLLSKSSHRPMAEADHRPRSHRAVQNQKSDSTEARGHYQQIKVKAVPTHRSRYNNFR
RTIRWTVRQGAKGRHSRGTTRARRARNLQLLEGRPGNFLGLPRLSPGECTHPWEDHNTRPFIVAEAIQAEREMLCT