; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024537 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024537
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationchr10:3779730..3780179
RNA-Seq ExpressionLag0024537
SyntenyLag0024537
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]1.4e-5383.82Show/hide
Query:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPD   L D DR+LEILKAVAQAW +HTG+SKPA+EFDAHRRN R  PSRFKLEAIRSR  SV++RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GG R QRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]7.6e-5585.29Show/hide
Query:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCS-VADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPD   L DDDR+LEILKAVAQAW SHTG+SKPA+EFDAHRRN R  PSRFK+EAIRSR S V+DRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCS-VADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GG R QRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

XP_022923731.1 uncharacterized protein LOC111431350 [Cucurbita moschata]7.9e-5276.35Show/hide
Query:  ALSIPFPTHNSLIQFTMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVS
        +L++  P  +   + TMK KP ++D+D +LEILKAVAQAWQSHTG+SKPA+EFDAHRRNCRANPSRFKLEAIRSR SV   RRWDF QSLWDSYEIV VS
Subjt:  ALSIPFPTHNSLIQFTMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVS

Query:  KKLEAGLVLDGDGFREDDGGGARIQRKRRESCNSLRNLFNRASSRRFN
        KKLE GLVLDGDGFRE DGGG R QRK+RESCNSLRNLFNR +SRRFN
Subjt:  KKLEAGLVLDGDGFREDDGGGARIQRKRRESCNSLRNLFNRASSRRFN

XP_023519325.1 uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo]1.1e-5082.71Show/hide
Query:  TMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        TMK KP ++D+D +LEILKAVAQAWQSHTG+SKPA+EFDAHRRNCRANPSRFKLEAIRSR SV   RRWDF QSLWDSYEIV VSKKLE GLVLDGDGFR
Subjt:  TMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EDDGGGARIQRKRRESCNSLRNLFNRASSRRFN
        E +GGG R QRK+RESCNSLRNLFNR +SRRFN
Subjt:  EDDGGGARIQRKRRESCNSLRNLFNRASSRRFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]1.2e-5585.82Show/hide
Query:  MKKKPDLQDDD--RYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MKKKP+LQDDD  R+LEILKAVAQAW SHTGSSKPA+EFDAHRRN R  PSRFKLEAIR+R SV+DRRWDF QSLWDSYEIVTVSKKLEAGLVLD DGFR
Subjt:  MKKKPDLQDDD--RYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        E DGGG R QRK+RESCNSLRNLF+RASSRRFNY
Subjt:  EDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein3.7e-5585.29Show/hide
Query:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCS-VADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPD   L DDDR+LEILKAVAQAW SHTG+SKPA+EFDAHRRN R  PSRFK+EAIRSR S V+DRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCS-VADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GG R QRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

A0A1S3AX17 uncharacterized protein LOC1034838297.0e-5483.82Show/hide
Query:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPD   L D DR+LEILKAVAQAW +HTG+SKPA+EFDAHRRN R  PSRFKLEAIRSR  SV++RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GG R QRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

A0A5A7UNW1 Uncharacterized protein7.0e-5483.82Show/hide
Query:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKKPD   L D DR+LEILKAVAQAW +HTG+SKPA+EFDAHRRN R  PSRFKLEAIRSR  SV++RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKPD---LQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRC-SVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY
        FRE + GG R QRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY

A0A6J1E7J5 uncharacterized protein LOC1114313503.8e-5276.35Show/hide
Query:  ALSIPFPTHNSLIQFTMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVS
        +L++  P  +   + TMK KP ++D+D +LEILKAVAQAWQSHTG+SKPA+EFDAHRRNCRANPSRFKLEAIRSR SV   RRWDF QSLWDSYEIV VS
Subjt:  ALSIPFPTHNSLIQFTMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVS

Query:  KKLEAGLVLDGDGFREDDGGGARIQRKRRESCNSLRNLFNRASSRRFN
        KKLE GLVLDGDGFRE DGGG R QRK+RESCNSLRNLFNR +SRRFN
Subjt:  KKLEAGLVLDGDGFREDDGGGARIQRKRRESCNSLRNLFNRASSRRFN

A0A6J1KNC1 uncharacterized protein LOC1114957277.2e-5184.09Show/hide
Query:  MKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFRE
        MK K  ++D+D +LEILKAVAQAWQSHTG+SKPA+EFDAHRRNCRANPSRFKLEAIRSR SVA  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFRE
Subjt:  MKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVAD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFRE

Query:  DDGGGARIQRKRRESCNSLRNLFNRASSRRFN
         DGGG R QRK+RESCNSLRNLFNR +SRRFN
Subjt:  DDGGGARIQRKRRESCNSLRNLFNRASSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein1.8e-2243.36Show/hide
Query:  MKKKPDLQDDD--------RYLEILKAVAQAWQSHTGSSK-PATEFDAHRRNC--RANPSRFKLEAIRSRCSVADRRWDFAQSLWDSYEIVTVSKKLEAG
        M+KK + +D++        + LE++KA AQAW SH+ +SK    EFDA R++   +   SRFK EA+ ++   +   W+F QSLWD YEI++VSKKLE  
Subjt:  MKKKPDLQDDD--------RYLEILKAVAQAWQSHTGSSK-PATEFDAHRRNC--RANPSRFKLEAIRSRCSVADRRWDFAQSLWDSYEIVTVSKKLEAG

Query:  LVLDGDGFREDDGGGARIQRKR--RESCNSLRNLFNRASSRRF
        L L+   F   D  G +  +K+  R+S NSLR+LF R+SS+RF
Subjt:  LVLDGDGFREDDGGGARIQRKR--RESCNSLRNLFNRASSRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCTTTCCATTCCATTTCCCACTCACAATTCACTCATTCAATTCACTATGAAGAAGAAACCAGATCTTCAAGACGACGATCGTTACCTCGAGATCCTCAAGGCCGT
CGCGCAGGCCTGGCAGAGCCACACCGGCAGTTCCAAGCCCGCTACTGAATTCGACGCCCATCGCCGGAATTGCAGGGCCAATCCGTCCAGGTTCAAGCTTGAGGCGATTA
GGAGCAGGTGTTCCGTCGCCGACCGGCGTTGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGAAGCTGGAGGCCGGGCTGGTGCTCGAC
GGCGATGGGTTTCGAGAGGACGACGGCGGCGGTGCGCGGATTCAGCGGAAACGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAATAGGGCTTCTTCGAGGAGATT
CAATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCTTTCCATTCCATTTCCCACTCACAATTCACTCATTCAATTCACTATGAAGAAGAAACCAGATCTTCAAGACGACGATCGTTACCTCGAGATCCTCAAGGCCGT
CGCGCAGGCCTGGCAGAGCCACACCGGCAGTTCCAAGCCCGCTACTGAATTCGACGCCCATCGCCGGAATTGCAGGGCCAATCCGTCCAGGTTCAAGCTTGAGGCGATTA
GGAGCAGGTGTTCCGTCGCCGACCGGCGTTGGGACTTCGCCCAGTCGCTGTGGGACTCGTATGAGATCGTGACGGTGTCGAAGAAGCTGGAGGCCGGGCTGGTGCTCGAC
GGCGATGGGTTTCGAGAGGACGACGGCGGCGGTGCGCGGATTCAGCGGAAACGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAATAGGGCTTCTTCGAGGAGATT
CAATTATTAG
Protein sequenceShow/hide protein sequence
MALSIPFPTHNSLIQFTMKKKPDLQDDDRYLEILKAVAQAWQSHTGSSKPATEFDAHRRNCRANPSRFKLEAIRSRCSVADRRWDFAQSLWDSYEIVTVSKKLEAGLVLD
GDGFREDDGGGARIQRKRRESCNSLRNLFNRASSRRFNY