; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024554 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024554
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr10:3889483..3890809
RNA-Seq ExpressionLag0024554
SyntenyLag0024554
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382410.1 uncharacterized protein LOC107175497 [Citrus sinensis]3.1e-4237.9Show/hide
Query:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR
        ++L++K K+ S+ GE+   I      S+        C+VGKI+  + VN E  R+ M   WR +    +E  G N+F+ +F    +K RV+G GPW FD 
Subjt:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR

Query:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE
        +L+VLTEPK +  +    F    FWV + N+P+ W  R   Q LG  IG VE++    E + IG I R R+ + + +PLR+   ++ +D      P+LYE
Subjt:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE

Query:  RLPDFCFGCGCLGHSRREC
        RLPDFCF CG +GH  +EC
Subjt:  RLPDFCFGCGCLGHSRREC

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]9.5e-6047.06Show/hide
Query:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD
        MD++   W+ +  T +E E +        L+A ++ LCVV K+ +SKR++ EA R+VM+S WRVHN+T  EP G N++VI F++  EKSRVL +GPW F+
Subjt:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY
        +SL+VLT P      L+  F  C FW+QIHN+P +  +   A  LG K+G VEE+ G   + W GP +R RV++ + +PLRRG  +++ DGKD WCP+ Y
Subjt:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        E+LPDFC+ CG +GHS RECE
Subjt:  ERLPDFCFGCGCLGHSRRECE

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]4.4e-5745.7Show/hide
Query:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD
        MDD+ K W++++L  EE + I        L+  ++ LC VGK+  SKR+  EAF +VM+  W++HN+T +E AG N++VI F+T  EK RV   GPW FD
Subjt:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY
        +SL++L         L+ +   C FWVQIH +  +  T+  A+ LG ++G VEEV G +  DW+ P L  RV++ + +PLRRG  ++  DGKD WCP+ Y
Subjt:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        ERLPDFC+GCGC+GHS RE E
Subjt:  ERLPDFCFGCGCLGHSRRECE

XP_024033132.1 uncharacterized protein LOC112095437 [Citrus clementina]1.4e-4237.44Show/hide
Query:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR
        ++L++K ++ +L GEEA+            +  +  C+VGKIL ++ VN E  +  +  AWR  +   VE  G N+FV +F +  +K RV   GPW FDR
Subjt:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR

Query:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE
        +L+VL EPK + S+ +  F    FW++IHNVP+        + LG ++G VE++G   + +  G  +R +V + + +PL++   ++ +D +D   PV+YE
Subjt:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE

Query:  RLPDFCFGCGCLGHSRREC
        RLPDFCF CGC+GH  REC
Subjt:  RLPDFCFGCGCLGHSRREC

XP_024955847.1 uncharacterized protein LOC112498636 [Citrus sinensis]1.1e-4238.36Show/hide
Query:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR
        ++L++K K+ S+ GE+   I      S+        C+VGKI+  + VN E  R+ M   WR +    +E  G N+F+ +F    +K RV+G GPW FD 
Subjt:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR

Query:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE
        +L+VLTEPK +  +    F    FWV + N+P+ W  R   Q LG  IG VEE+    E + IG I R R+ + + +PLR+   ++ +D      P+LYE
Subjt:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYE

Query:  RLPDFCFGCGCLGHSRREC
        RLPDFCF CG +GH  +EC
Subjt:  RLPDFCFGCGCLGHSRREC

TrEMBL top hitse value%identityAlignment
A0A5C7GUN1 Uncharacterized protein3.2e-3738.46Show/hide
Query:  SLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDRSLIVLTEPKD
        SLT  E  V R   V     A  L LC+ GKILS + +N EAFR+++   W+V     +E    N++   F++  ++ RV   GPW+FD +LIVL EP+ 
Subjt:  SLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDRSLIVLTEPKD

Query:  VASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQD-DDGKDSWCPVLYERLPDFCFGC
          ++    F    FWV I NVPM + T+   + LG  IG V EV     +D +G  +R RV + +D+PLRR   +    DG+++  P+ YERLP FCF C
Subjt:  VASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQD-DDGKDSWCPVLYERLPDFCFGC

Query:  GCLGHSRRECEGVGASSTGAG
        G +GH   EC   G      G
Subjt:  GCLGHSRRECEGVGASSTGAG

A0A5C7IJL3 CCHC-type domain-containing protein2.4e-3736.44Show/hide
Query:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR
        +++ +  ++ S+  E+ E+ +           D+D C+VGK+LS KRVN EAF +V+   W       +E  GENVF+  F+   ++SRV   GPW FD+
Subjt:  DDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDR

Query:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQ-DDDGKDSWCPVLY
        SLIVL  P+    + +  F    FWVQIH++P+    R  A+ L  +IG V E+   + + W G  LR +VR+ + RPL+R   +  D  G      + Y
Subjt:  SLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQ-DDDGKDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECEGVGA
        ER+P+FCF CG +GH   EC  + A
Subjt:  ERLPDFCFGCGCLGHSRRECEGVGA

A0A6J1D765 uncharacterized protein LOC1110179024.6e-6047.06Show/hide
Query:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD
        MD++   W+ +  T +E E +        L+A ++ LCVV K+ +SKR++ EA R+VM+S WRVHN+T  EP G N++VI F++  EKSRVL +GPW F+
Subjt:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY
        +SL+VLT P      L+  F  C FW+QIHN+P +  +   A  LG K+G VEE+ G   + W GP +R RV++ + +PLRRG  +++ DGKD WCP+ Y
Subjt:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        E+LPDFC+ CG +GHS RECE
Subjt:  ERLPDFCFGCGCLGHSRRECE

A0A6J1DP89 uncharacterized protein LOC1110229321.3e-4138.81Show/hide
Query:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD
        MD++ + W++++LT E+ E I   +    ++  ++    VGK+ +SKR++ EAFR+VM+S W+VH +T +E AG N++VI F++  EK+RVL +GPW+F+
Subjt:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY
         SL+VLT P       +  F     W+QIH +P +   +  A+ LG +IG VEE+  +   +W GP +R RV++ + +P +RG  ++  D K+SWCP+ Y
Subjt:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY

Query:  E
        E
Subjt:  E

A0A6J1DVS4 uncharacterized protein LOC1110235552.1e-5745.7Show/hide
Query:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD
        MDD+ K W++++L  EE + I        L+  ++ LC VGK+  SKR+  EAF +VM+  W++HN+T +E AG N++VI F+T  EK RV   GPW FD
Subjt:  MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY
        +SL++L         L+ +   C FWVQIH +  +  T+  A+ LG ++G VEEV G +  DW+ P L  RV++ + +PLRRG  ++  DGKD WCP+ Y
Subjt:  RSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        ERLPDFC+GCGC+GHS RE E
Subjt:  ERLPDFCFGCGCLGHSRRECE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding1.4e-0825.85Show/hide
Query:  IQFRTRGEKS--RVLGTGPWAFDRSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLD
        I+F  + E+S   +L  GPW+F+  + V+     + S  + EFK  PFW+QI  +P+++ T      +G ++G+  E     +      +L+F+      
Subjt:  IQFRTRGEKS--RVLGTGPWAFDRSLIVLTEPKDVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLD

Query:  RPLRRGFHMQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVG
                              YE+L +FC  CG L H   EC   G
Subjt:  RPLRRGFHMQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACTTGGTGAAAAAGTGGAAGTCGTGGTCACTTACTGGGGAGGAGGCGGAGGTGATACGTCCGGGTGCAGTTCCGTCTTCTCTGTCAGCGGCAGACTTGGATCT
ATGTGTGGTTGGTAAGATTCTATCATCCAAGCGAGTCAATCCAGAGGCCTTTCGGAATGTGATGCGGTCAGCATGGAGGGTTCACAATGCGACGTGTGTGGAGCCAGCGG
GAGAGAACGTCTTTGTTATTCAGTTTCGTACCAGAGGGGAGAAGTCGCGAGTTCTAGGAACGGGTCCTTGGGCCTTTGACCGGTCCCTTATTGTGCTTACGGAGCCCAAG
GATGTTGCATCGGTGCTAGAAACAGAGTTTAAAGATTGTCCTTTCTGGGTGCAGATTCATAATGTTCCTATGAAGTGGCAGACGAGAGGTTGGGCGCAGCATCTGGGAGG
CAAGATTGGGGTGGTTGAGGAGGTGGGCGGTTCAAATGAGAATGATTGGATAGGCCCTATTCTGCGGTTCAGAGTTCGCCTTCGGTTGGACCGTCCACTTCGGAGGGGGT
TTCATATGCAGGATGATGATGGGAAGGACTCTTGGTGCCCAGTTTTGTACGAGCGTCTTCCAGACTTCTGCTTTGGGTGTGGATGTTTAGGCCATTCAAGGCGGGAGTGT
GAGGGTGTGGGGGCAAGTTCTACGGGTGCGGGGAGGATCAGTATGGATCCAGGTCAGATAGGTGTAAAGAACAGTGGGAAGCAGTCCGCAGTGGAACCCACGCCTGTTTC
AGGGGAGGTAGTAGGTCCCGTTCAGGGTGATGTGCATGAGAAGGAGGCAGGGGTACCTGACAGCGTTGTTGGGGAGGAAGTGCCAGTTCCTGCGCTGGATACACGGGCAG
AGATTTGCACGGTGGAGGGAGGGAAGACAGCCCAGATGGAGGGTAGTGGGAAGGGAAAGCAGAAGGGCGGAGATGTTGAGAAGGGGGGCAAGAGTACCAGTAGCAAGGGG
TGGAAGAGGCGAGCAAGAGAGATTTTAGCAGATGTTACAAATTCTGAGGTTTCTGTGACGCTGGATGGAAGCAAACGGAAGGTTGGTCCGGGGTCGTTGGCCGGACAGGG
GGGAAAGAAGATGAGAGTGGAGGAGGAAAGTGGGATTCTACCAGATATGACTGACTCGACTTCGGCGGTGGCTGTCTCACAGCCCCGCCAGTCGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGACTTGGTGAAAAAGTGGAAGTCGTGGTCACTTACTGGGGAGGAGGCGGAGGTGATACGTCCGGGTGCAGTTCCGTCTTCTCTGTCAGCGGCAGACTTGGATCT
ATGTGTGGTTGGTAAGATTCTATCATCCAAGCGAGTCAATCCAGAGGCCTTTCGGAATGTGATGCGGTCAGCATGGAGGGTTCACAATGCGACGTGTGTGGAGCCAGCGG
GAGAGAACGTCTTTGTTATTCAGTTTCGTACCAGAGGGGAGAAGTCGCGAGTTCTAGGAACGGGTCCTTGGGCCTTTGACCGGTCCCTTATTGTGCTTACGGAGCCCAAG
GATGTTGCATCGGTGCTAGAAACAGAGTTTAAAGATTGTCCTTTCTGGGTGCAGATTCATAATGTTCCTATGAAGTGGCAGACGAGAGGTTGGGCGCAGCATCTGGGAGG
CAAGATTGGGGTGGTTGAGGAGGTGGGCGGTTCAAATGAGAATGATTGGATAGGCCCTATTCTGCGGTTCAGAGTTCGCCTTCGGTTGGACCGTCCACTTCGGAGGGGGT
TTCATATGCAGGATGATGATGGGAAGGACTCTTGGTGCCCAGTTTTGTACGAGCGTCTTCCAGACTTCTGCTTTGGGTGTGGATGTTTAGGCCATTCAAGGCGGGAGTGT
GAGGGTGTGGGGGCAAGTTCTACGGGTGCGGGGAGGATCAGTATGGATCCAGGTCAGATAGGTGTAAAGAACAGTGGGAAGCAGTCCGCAGTGGAACCCACGCCTGTTTC
AGGGGAGGTAGTAGGTCCCGTTCAGGGTGATGTGCATGAGAAGGAGGCAGGGGTACCTGACAGCGTTGTTGGGGAGGAAGTGCCAGTTCCTGCGCTGGATACACGGGCAG
AGATTTGCACGGTGGAGGGAGGGAAGACAGCCCAGATGGAGGGTAGTGGGAAGGGAAAGCAGAAGGGCGGAGATGTTGAGAAGGGGGGCAAGAGTACCAGTAGCAAGGGG
TGGAAGAGGCGAGCAAGAGAGATTTTAGCAGATGTTACAAATTCTGAGGTTTCTGTGACGCTGGATGGAAGCAAACGGAAGGTTGGTCCGGGGTCGTTGGCCGGACAGGG
GGGAAAGAAGATGAGAGTGGAGGAGGAAAGTGGGATTCTACCAGATATGACTGACTCGACTTCGGCGGTGGCTGTCTCACAGCCCCGCCAGTCGCAATGA
Protein sequenceShow/hide protein sequence
MDDLVKKWKSWSLTGEEAEVIRPGAVPSSLSAADLDLCVVGKILSSKRVNPEAFRNVMRSAWRVHNATCVEPAGENVFVIQFRTRGEKSRVLGTGPWAFDRSLIVLTEPK
DVASVLETEFKDCPFWVQIHNVPMKWQTRGWAQHLGGKIGVVEEVGGSNENDWIGPILRFRVRLRLDRPLRRGFHMQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRREC
EGVGASSTGAGRISMDPGQIGVKNSGKQSAVEPTPVSGEVVGPVQGDVHEKEAGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKGGDVEKGGKSTSSKG
WKRRAREILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEEESGILPDMTDSTSAVAVSQPRQSQ