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Lag0024555 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024555
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr10:3905199..3905711
RNA-Seq ExpressionLag0024555
SyntenyLag0024555
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB93772.1 hypothetical protein L484_010911 [Morus notabilis]1.5e-0643.3Show/hide
Query:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVNP
        PS    +   Q   S+PS+ P  FPS          S++  PT+ P L+IKL D N+LLWKNQ+LN IIA   + FIDG+ P P +FL     +VNP
Subjt:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVNP

EXB93775.1 hypothetical protein L484_010914 [Morus notabilis]7.5e-0642.71Show/hide
Query:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVN
        PS    +   Q   S+PS+ P  FPS          S++  PT+ P L+IKL D N+LLWKNQ+LN IIA D +  IDG+ P P +FL     +VN
Subjt:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVN

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.5e-0956.06Show/hide
Query:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQANTQVNP
        + P  + + YP+L+ PL IKL ++N  LWKNQLLN IIA  +E FI+G TP P+KFLD A  QVNP
Subjt:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQANTQVNP

RVX22862.1 hypothetical protein CK203_008411 [Vitis vinifera]8.8e-0753.33Show/hide
Query:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQA
        + P  + + YP+L+ PL IKL ++N  LWKNQL+N IIA  +E FI+G TP P+KFLD A
Subjt:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQA

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]3.2e-0945.35Show/hide
Query:  QYPPSSPSSFPFFPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGT-PPPSKFLDQANTQVNP
        Q+PP +P+     P+          S +P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  ++DGT  PP +FLD    Q NP
Subjt:  QYPPSSPSSFPFFPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGT-PPPSKFLDQANTQVNP

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE17.0e-1056.06Show/hide
Query:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQANTQVNP
        + P  + + YP+L+ PL IKL ++N  LWKNQLLN IIA  +E FI+G TP P+KFLD A  QVNP
Subjt:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQANTQVNP

A0A438KNU0 Uncharacterized protein4.3e-0753.33Show/hide
Query:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQA
        + P  + + YP+L+ PL IKL ++N  LWKNQL+N IIA  +E FI+G TP P+KFLD A
Subjt:  YLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDG-TPPPSKFLDQA

A0A6J1DQX7 uncharacterized protein LOC1110223151.6e-0945.35Show/hide
Query:  QYPPSSPSSFPFFPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGT-PPPSKFLDQANTQVNP
        Q+PP +P+     P+          S +P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  ++DGT  PP +FLD    Q NP
Subjt:  QYPPSSPSSFPFFPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGT-PPPSKFLDQANTQVNP

W9RJ64 Uncharacterized protein7.3e-0743.3Show/hide
Query:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVNP
        PS    +   Q   S+PS+ P  FPS          S++  PT+ P L+IKL D N+LLWKNQ+LN IIA   + FIDG+ P P +FL     +VNP
Subjt:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVNP

W9RUD8 Uncharacterized protein3.6e-0642.71Show/hide
Query:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVN
        PS    +   Q   S+PS+ P  FPS          S++  PT+ P L+IKL D N+LLWKNQ+LN IIA D +  IDG+ P P +FL     +VN
Subjt:  PSNPQPTAGFQYPPSSPSSFPF-FPSHAGTQYLPQQSLSPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPP-PSKFLDQANTQVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTTCTTCCACCAACGTCGCGTCGCACAGTGATCATCTTCCTGTTATCTCCTCCACCGCTACTGTGACCACTCCGATTACAACCCCTGTCTCTTCTCAACGCCT
TCATCAGAATCCTTCTCCATCTCTAAACCCCAATGTTGCTCCCTTCCCTCAGAGATTTCAATCCTCCACCTTCCCTTTTCCCTCAAATCCTCAGCCGACTGCAGGTTTTC
AATACCCTCCTTCTTCCCCATCCTCTTTCCCTTTTTTTCCCTCTCATGCTGGCACTCAGTATCTTCCTCAGCAATCTCTTTCTCCATACCCCACCCTTACCCCACCTCTA
AATATCAAACTCAGTGACTCCAACTACTTGCTATGGAAGAACCAGCTTTTGAATCACATTATCGCCTTTGATATGGAGAGTTTCATTGACGGCACACCTCCTCCCTCCAA
ATTTCTTGATCAAGCAAATACTCAGGTAAACCCTTATTTACCGTTTGGCAGAAGTATAATCGAACCCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTCTTCTTCCACCAACGTCGCGTCGCACAGTGATCATCTTCCTGTTATCTCCTCCACCGCTACTGTGACCACTCCGATTACAACCCCTGTCTCTTCTCAACGCCT
TCATCAGAATCCTTCTCCATCTCTAAACCCCAATGTTGCTCCCTTCCCTCAGAGATTTCAATCCTCCACCTTCCCTTTTCCCTCAAATCCTCAGCCGACTGCAGGTTTTC
AATACCCTCCTTCTTCCCCATCCTCTTTCCCTTTTTTTCCCTCTCATGCTGGCACTCAGTATCTTCCTCAGCAATCTCTTTCTCCATACCCCACCCTTACCCCACCTCTA
AATATCAAACTCAGTGACTCCAACTACTTGCTATGGAAGAACCAGCTTTTGAATCACATTATCGCCTTTGATATGGAGAGTTTCATTGACGGCACACCTCCTCCCTCCAA
ATTTCTTGATCAAGCAAATACTCAGGTAAACCCTTATTTACCGTTTGGCAGAAGTATAATCGAACCCTTATGA
Protein sequenceShow/hide protein sequence
MTSSSTNVASHSDHLPVISSTATVTTPITTPVSSQRLHQNPSPSLNPNVAPFPQRFQSSTFPFPSNPQPTAGFQYPPSSPSSFPFFPSHAGTQYLPQQSLSPYPTLTPPL
NIKLSDSNYLLWKNQLLNHIIAFDMESFIDGTPPPSKFLDQANTQVNPYLPFGRSIIEPL