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Lag0024564 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024564
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:3995900..3996439
RNA-Seq ExpressionLag0024564
SyntenyLag0024564
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]3.3e-1230.77Show/hide
Query:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----
        SF + W  +  S   EE GL A  CW +W  RN  +     + +I L+ + +   Q+    F +AN+    I G  +SP   +P   W PP   ++    
Subjt:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----

Query:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
         G+G+  RN+NG    A  R    ++   + EL A +EG+R A D+G     LE D    +N I  T E
Subjt:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

XP_016684339.1 uncharacterized protein LOC107902718 [Gossypium hirsutum]6.2e-1128.66Show/hide
Query:  WMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPETGIGIA--------
        W+L  S       G++ VT W IW  RNK +H+  +  +++   +I+ + L++  +N+K      + +   +  P   W+  ++ + G+ IA        
Subjt:  WMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPETGIGIA--------

Query:  -CRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
          RN  G + G+G +  ++      AE  A+L G++ A DLG   V LESD  + VN I K+SE
Subjt:  -CRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]9.0e-1831.49Show/hide
Query:  YTSKYASQIEFNGSFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP
        + S + S I  N SF+D W+L+     P++  L A T WAIW DRN   H  S+     R  WI  Y   + +A   +   R      S P P+  W+PP
Subjt:  YTSKYASQIEFNGSFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP

Query:  -------------SLPETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFI
                         TG+G+  R+  GVL  A + F  M  +   AE+R ILE ++LA      ++ +ESDC  A+  +
Subjt:  -------------SLPETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFI

XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]9.6e-1235.71Show/hide
Query:  AVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPS-PNSSWIPP---------------SLPETGIGIACRNSNGVL
        AVT W++W +RN                  ++Y+    E  S R P  G    PS PS PN  W+PP                +   GIG+  RN  G+L
Subjt:  AVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPS-PNSSWIPP---------------SLPETGIGIACRNSNGVL

Query:  FGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTS
         GA ++  DM     E E RA+ EG+RLA DLGL+K+ LESD L  VN +   S
Subjt:  FGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTS

XP_023880097.1 uncharacterized protein LOC111992470 [Quercus suber]3.6e-1132.03Show/hide
Query:  AVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP---------------SLPETGIGIACRNSNGVLF
        AVT W++W +RN                  ++Y  +       R        SP  P PN  W+PP                L   GIG+  RN  G+L 
Subjt:  AVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP---------------SLPETGIGIACRNSNGVLF

Query:  GAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTS
        G+ ++  D+     E E RA+ EG+RLA DLGL+K+ LESD L  VN +   S
Subjt:  GAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTS

TrEMBL top hitse value%identityAlignment
A0A1U8J822 uncharacterized protein LOC1079027183.0e-1128.66Show/hide
Query:  WMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPETGIGIA--------
        W+L  S       G++ VT W IW  RNK +H+  +  +++   +I+ + L++  +N+K      + +   +  P   W+  ++ + G+ IA        
Subjt:  WMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPETGIGIA--------

Query:  -CRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
          RN  G + G+G +  ++      AE  A+L G++ A DLG   V LESD  + VN I K+SE
Subjt:  -CRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

A0A251NPF0 Reverse transcriptase domain-containing protein1.6e-1230.77Show/hide
Query:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----
        SF + W  +  S   EE GL A  CW +W  RN  +     + +I L+ + +   Q+    F +AN+    I G  +SP   +P   W PP   ++    
Subjt:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----

Query:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
         G+G+  RN+NG    A  R    ++   + EL A +EG+R A D+G     LE D    +N I  T E
Subjt:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

A0A5E4FZN9 PREDICTED: retrotransposon5.1e-1128Show/hide
Query:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSL-----------
        SF + W  +  S   EE GL A  CW +W  RN  + +       +    +     +F  AN+    I G  +SP   +P   W PP             
Subjt:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSL-----------

Query:  ----PETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
               G+G+  RN+NG    A  R    ++   + EL A +EG+R A D+G     LE D    +N I  T E
Subjt:  ----PETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

A0A6J1BQ49 uncharacterized protein LOC1110047864.3e-1831.49Show/hide
Query:  YTSKYASQIEFNGSFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP
        + S + S I  N SF+D W+L+     P++  L A T WAIW DRN   H  S+     R  WI  Y   + +A   +   R      S P P+  W+PP
Subjt:  YTSKYASQIEFNGSFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPP

Query:  -------------SLPETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFI
                         TG+G+  R+  GVL  A + F  M  +   AE+R ILE ++LA      ++ +ESDC  A+  +
Subjt:  -------------SLPETGIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFI

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)1.6e-1230.77Show/hide
Query:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----
        SF + W  +  S   EE GL A  CW +W  RN  +     + +I L+ + +   Q+    F +AN+    I G  +SP   +P   W PP   ++    
Subjt:  SFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHV----HDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET----

Query:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE
         G+G+  RN+NG    A  R    ++   + EL A +EG+R A D+G     LE D    +N I  T E
Subjt:  -GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGCCAAAATATACAAGCAAATATGCTAGTCAGATCGAGTTCAACGGAAGCTTCGTGGATAGATGGATGCTGATCACCTCTAGTTGCTGTCCTGAGGAGCTTGG
CTTGGTCGCGGTTACCTGCTGGGCTATCTGGATGGATAGAAACAAGCATGTTCATGACGAATCTATTCCCCTAGTTGATAAAAGGAGTCTATGGATTCAGGATTACCTGT
TAAAATTTGTGGAGGCAAATTCGAAGAGGTTTCCTATCAGAGGTGTTTCTGCGTCGCCTTCTTTTCCCTCCCCAAATTCCTCGTGGATTCCGCCATCTCTTCCTGAGACT
GGAATTGGGATCGCTTGCAGAAATTCAAACGGTGTATTATTTGGGGCTGGAACTCGTTTTTTTGACATGAATTTCGATGGAACGGAAGCCGAGTTGAGAGCGATCTTGGA
GGGCATGCGTCTGGCGGAGGATCTAGGGCTTCGAAAAGTGACCCTGGAGTCTGATTGTTTGATAGCTGTAAATTTCATAAACAAGACATCAGAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGCCAAAATATACAAGCAAATATGCTAGTCAGATCGAGTTCAACGGAAGCTTCGTGGATAGATGGATGCTGATCACCTCTAGTTGCTGTCCTGAGGAGCTTGG
CTTGGTCGCGGTTACCTGCTGGGCTATCTGGATGGATAGAAACAAGCATGTTCATGACGAATCTATTCCCCTAGTTGATAAAAGGAGTCTATGGATTCAGGATTACCTGT
TAAAATTTGTGGAGGCAAATTCGAAGAGGTTTCCTATCAGAGGTGTTTCTGCGTCGCCTTCTTTTCCCTCCCCAAATTCCTCGTGGATTCCGCCATCTCTTCCTGAGACT
GGAATTGGGATCGCTTGCAGAAATTCAAACGGTGTATTATTTGGGGCTGGAACTCGTTTTTTTGACATGAATTTCGATGGAACGGAAGCCGAGTTGAGAGCGATCTTGGA
GGGCATGCGTCTGGCGGAGGATCTAGGGCTTCGAAAAGTGACCCTGGAGTCTGATTGTTTGATAGCTGTAAATTTCATAAACAAGACATCAGAGGCATGA
Protein sequenceShow/hide protein sequence
MEKPKYTSKYASQIEFNGSFVDRWMLITSSCCPEELGLVAVTCWAIWMDRNKHVHDESIPLVDKRSLWIQDYLLKFVEANSKRFPIRGVSASPSFPSPNSSWIPPSLPET
GIGIACRNSNGVLFGAGTRFFDMNFDGTEAELRAILEGMRLAEDLGLRKVTLESDCLIAVNFINKTSEA