; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024589 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024589
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description30S ribosomal protein S21, chloroplastic-like
Genome locationchr10:4217261..4219655
RNA-Seq ExpressionLag0024589
SyntenyLag0024589
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152510.2 30S ribosomal protein S21, chloroplastic [Cucumis sativus]6.3e-4569.41Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSS+T FF+ LSISKSS I   SVS+N   QS P SK  RL A+RG+  SSS EP  V L +   +YN+LITV E ESE+++V RFRRQVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY
        LQECKRRRFFENSQAKRKRKAREAAKRNRKR F RPQS   +Q  Q+    KNRDE DDNWDFYQVDLPY
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY

XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]2.6e-4669.77Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSS+T FF+ LSISKSS I   SVS+N  FQS PKSK  RL A+RG+  SSS EP  VS  +   +YNVLITV E ESE+++V RFR QVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        LQECKRRRFFENSQAKRKRKAREAAKRNRKR F RPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_022954830.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]5.7e-4667.46Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE
        AAT+SLT+FF+ LSISK S    ESVSLNFQ  ++P       A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGILQE
Subjt:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        CKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQEITR+K+ DE DDNW+FYQVDLPYCS
Subjt:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_023542788.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]9.8e-4667.46Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE
        AAT+SLT+FF+ LSISK S    ESVSLNFQ  ++PK      A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGILQE
Subjt:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        CKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQE TR+K+ DE DDNW+FYQVDLPYCS
Subjt:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]2.6e-5476.16Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSSLTKFF+SLSISKSS I   SVS+N   QS PKSKPARL ATRGS T SS EP  V  G++   YNVLITV E ESE++LV RFRRQVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        LQECKRRRFFENSQAKRKRKAREAAKRNRKRWF RPQS+ E+Q  ++  ++KNRDE DDNWDFYQVDLPYCS
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein3.1e-4569.41Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSS+T FF+ LSISKSS I   SVS+N   QS P SK  RL A+RG+  SSS EP  V L +   +YN+LITV E ESE+++V RFRRQVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY
        LQECKRRRFFENSQAKRKRKAREAAKRNRKR F RPQS   +Q  Q+    KNRDE DDNWDFYQVDLPY
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPY

A0A1S3AZ70 uncharacterized protein LOC1034841451.2e-4669.77Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSS+T FF+ LSISKSS I   SVS+N  FQS PKSK  RL A+RG+  SSS EP  VS  +   +YNVLITV E ESE+++V RFR QVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        LQECKRRRFFENSQAKRKRKAREAAKRNRKR F RPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

A0A6J1GTI1 30S ribosomal protein S21, chloroplastic-like2.8e-4667.46Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE
        AAT+SLT+FF+ LSISK S    ESVSLNFQ  ++P       A TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGILQE
Subjt:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQE

Query:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        CKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQEITR+K+ DE DDNW+FYQVDLPYCS
Subjt:  CKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

A0A6J1K257 30S ribosomal protein S21, chloroplastic-like6.8e-4569.01Show/hide
Query:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAA--TRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL
        AAT+SLT+FF+ LSISK S    ESVSLN  FQS  K+K ARLAA  TR S TSSSPE     L V+  +YNVLITVD  + EE+LV +FRRQVLRAGIL
Subjt:  AATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAA--TRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGIL

Query:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        QECKRRRFFENSQAKRKRKARE+AKRNRKR   +P+S+ E+Q KQE TR+K+ +E +DNWDFYQVDLPYCS
Subjt:  QECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

E5GBW8 Structural constituent of ribosome1.2e-4669.77Show/hide
Query:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI
        MAAAATSS+T FF+ LSISKSS I   SVS+N  FQS PKSK  RL A+RG+  SSS EP  VS  +   +YNVLITV E ESE+++V RFR QVLRAGI
Subjt:  MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGI

Query:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS
        LQECKRRRFFENSQAKRKRKAREAAKRNRKR F RPQS  E+Q  ++    KN+DE DDNWDFYQVDLPY S
Subjt:  LQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic9.9e-1748.04Show/hide
Query:  KNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDL
        ++ YNV + VD+ E+EERL+ RFRR+V+RAG++QECKRRR+FEN Q ++KRK REAAKRN +R   R   +     K+E T+   +++  DNWD  +   
Subjt:  KNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDL

Query:  PY
        P+
Subjt:  PY

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein3.7e-1939.13Show/hide
Query:  AATSSLTKFFTSLSISKSS-----PIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSS----------PEPAVVSLGVKKNHYNVLITVDEKESEERLV
        AA+ SLT F + +S  KS      P      S     + R       +A    S T+SS          P  A  +     + YNV + V++ ESEERLV
Subjt:  AATSSLTKFFTSLSISKSS-----PIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSS----------PEPAVVSLGVKKNHYNVLITVDEKESEERLV

Query:  GRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQE---ITRKKNRDEADDNWDFYQVDLP
         RFRR+V+R G++QECKRRR+FEN Q ++KR+ R+AAKRN+KR   RPQ++  Q++++E    T+ K +DE +DNW+    D+P
Subjt:  GRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQE---ITRKKNRDEADDNWDFYQVDLP

AT5G63300.1 Ribosomal protein S21 family protein4.4e-1236.22Show/hide
Query:  MAAAATSSLTKFFTSLSISK-SSPIRCESVSLNFQFQSRPKSKPAR----LAATRGSGTSSSPEPAVVSLGV---KKNHYNVLITVDEKESEERLVGRFR
        MA  +  SL++  +SL  SK  SP   + ++L     +R     +     L A      +    P++ +  +   K ++YNV +   + ESEE+LV  F+
Subjt:  MAAAATSSLTKFFTSLSISK-SSPIRCESVSLNFQFQSRPKSKPAR----LAATRGSGTSSSPEPAVVSLGV---KKNHYNVLITVDEKESEERLVGRFR

Query:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNR-----DEADDNWDF--YQVDLPY
        R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR   RP  K +  S  EI RK NR     DE DD+W+     +++PY
Subjt:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNR-----DEADDNWDF--YQVDLPY

AT5G63300.2 Ribosomal protein S21 family protein7.8e-0935.97Show/hide
Query:  MAAAATSSLTKFFTSLSISK-SSPIRCESVSLNFQFQSRPKSKPAR----LAATRGSGTSSSPEPAVVSLGV---KKNHYNVLITVDEKESEERLVGRFR
        MA  +  SL++  +SL  SK  SP   + ++L     +R     +     L A      +    P++ +  +   K ++YNV +   + ESEE+LV  F+
Subjt:  MAAAATSSLTKFFTSLSISK-SSPIRCESVSLNFQFQSRPKSKPAR----LAATRGSGTSSSPEPAVVSLGV---KKNHYNVLITVDEKESEERLVGRFR

Query:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR
        R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Subjt:  RQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCTGCAACTTCATCTCTCACGAAGTTCTTCACCTCACTCTCAATCTCGAAATCATCACCAATACGCTGTGAATCCGTCTCTTTAAACTTTCAGTTTCAGTC
TCGTCCGAAGTCCAAACCGGCTCGGTTGGCTGCCACCAGGGGCTCTGGAACGTCTTCTTCCCCAGAACCTGCTGTTGTCTCCTTAGGCGTAAAGAAAAATCATTACAATG
TTCTGATCACCGTGGACGAGAAAGAGTCTGAAGAGCGGCTGGTGGGTCGGTTCAGGAGGCAGGTCTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTT
GAAAACAGCCAGGCCAAGCGAAAGAGGAAAGCCAGAGAAGCTGCTAAAAGGAATCGCAAGAGATGGTTCACGAGGCCTCAATCAAAAGATGAGCAGCAGTCAAAACAGGA
AATCACTCGGAAGAAGAATAGGGATGAGGCAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCTGCAACTTCATCTCTCACGAAGTTCTTCACCTCACTCTCAATCTCGAAATCATCACCAATACGCTGTGAATCCGTCTCTTTAAACTTTCAGTTTCAGTC
TCGTCCGAAGTCCAAACCGGCTCGGTTGGCTGCCACCAGGGGCTCTGGAACGTCTTCTTCCCCAGAACCTGCTGTTGTCTCCTTAGGCGTAAAGAAAAATCATTACAATG
TTCTGATCACCGTGGACGAGAAAGAGTCTGAAGAGCGGCTGGTGGGTCGGTTCAGGAGGCAGGTCTTGAGAGCTGGGATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTT
GAAAACAGCCAGGCCAAGCGAAAGAGGAAAGCCAGAGAAGCTGCTAAAAGGAATCGCAAGAGATGGTTCACGAGGCCTCAATCAAAAGATGAGCAGCAGTCAAAACAGGA
AATCACTCGGAAGAAGAATAGGGATGAGGCAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACTGTTCATAG
Protein sequenceShow/hide protein sequence
MAAAATSSLTKFFTSLSISKSSPIRCESVSLNFQFQSRPKSKPARLAATRGSGTSSSPEPAVVSLGVKKNHYNVLITVDEKESEERLVGRFRRQVLRAGILQECKRRRFF
ENSQAKRKRKAREAAKRNRKRWFTRPQSKDEQQSKQEITRKKNRDEADDNWDFYQVDLPYCS