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Lag0024624 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024624
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:4461904..4463311
RNA-Seq ExpressionLag0024624
SyntenyLag0024624
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023876543.1 uncharacterized protein LOC111988969 [Quercus suber]6.4e-0940.43Show/hide
Query:  SSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR--HD
        +SP  WVPPP  F KINVD A      S  IG ++R+S+G++V A+S  +   F A L E+MA+  G  +A+ L + K+  E D    I+  HD
Subjt:  SSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR--HD

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]6.4e-0935Show/hide
Query:  QSPHVS-----SPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR
        Q  H+S       + W+PPP+N +K+NVDAA+ S   S  +GA++R+SNG++V A  +   +   A LAE  A+  G+++A++  V  + +E+DC + ++
Subjt:  QSPHVS-----SPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR

XP_030483253.1 uncharacterized protein LOC115699850 [Cannabis sativa]1.9e-0838.46Show/hide
Query:  NNSQSPHVSSP-----------ERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINV
        N++ +P V++P            +W PPPEN +K+NVDAA  S+   + IG I+RNS+G++VGAMS     +FK+   E  A++ G+  AK   +    V
Subjt:  NNSQSPHVSSP-----------ERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINV

Query:  EADC
        E DC
Subjt:  EADC

XP_030923049.1 uncharacterized protein LOC115949928 [Quercus lobata]1.9e-0842.68Show/hide
Query:  PERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEAD
        P+RW PPP N++K+NVD A      S+ +G ++RN+ GE++GAMS  ++    A  AE  A+  GI  A  LG+  I VE D
Subjt:  PERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEAD

XP_030923260.1 uncharacterized protein LOC115950147 [Quercus lobata]6.4e-0940Show/hide
Query:  SSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR
        ++P  WVPPP  F KINVD A      S  I  ++R+S G++V A+S  + V F A L+E+MA+  G+ +A+ L + +I +E+D   AI+
Subjt:  SSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein1.2e-0835.29Show/hide
Query:  WVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR
        W  PPE   K+NVDA+++        GA++R+++G  V A +S + + + A +AE MA+W GI+ AKSLG   + + +D  + ++
Subjt:  WVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIR

A0A251N8A4 RNase H domain-containing protein1.7e-0736.73Show/hide
Query:  NSQSPHVSSPE--RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAI
        N+   H  SP    W PPP    K+NVD A  ++     +GA++RN +G+++GA+S  +   F A + EL+AI EG++ A   G   + VE D   AI
Subjt:  NSQSPHVSSPE--RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAI

A0A803P9C5 Uncharacterized protein1.5e-0844.44Show/hide
Query:  RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADC
        +W PPPEN +K+NVDAA  S+   + IG I+RNS G++VGAMS     +FK+   E  A++ G+  AK   +    VE DC
Subjt:  RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADC

A0A803QGD0 Uncharacterized protein1.5e-0844.44Show/hide
Query:  RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADC
        +W PPPEN +K+NVDA   S+   + IGAI+RNS G++VGAMS     +FK+   E  A++ G+  AK   +    VE DC
Subjt:  RWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADC

M5VKH8 RNase H domain-containing protein5.9e-0838.61Show/hide
Query:  NNSQSPHVSSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAP---LAELMAIWEGIKMAKSLGVGKINVEADCSQAI
        + ++S H S+   W  P E F KINVDAAW  +      G ++RN  G  +GA S    VDF+A    +AE  A+WEG K AK  G   +  E+D  + I
Subjt:  NNSQSPHVSSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAP---LAELMAIWEGIKMAKSLGVGKINVEADCSQAI

Query:  R
        +
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTTGAGAATAATTCTCAAAGCCCCCATGTTTCGTCCCCTGAGCGATGGGTTCCCCCGCCTGAAAATTTCTGGAAAATAAACGTGGATGCGGCATGGGTTTCAAC
ACCTCCGTCGATGAGAATTGGTGCAATTCTCAGGAATTCCAATGGGGAAATGGTTGGGGCGATGTCTTCCTATGTAAACGTTGATTTCAAAGCTCCTCTAGCTGAATTGA
TGGCGATATGGGAAGGAATTAAAATGGCTAAATCATTAGGAGTTGGAAAAATAAATGTGGAAGCCGATTGTTCCCAAGCAATCAGGCATGATTACATGATGGATGGATTT
CAAGTAATTTCAATAGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACTTGAGAATAATTCTCAAAGCCCCCATGTTTCGTCCCCTGAGCGATGGGTTCCCCCGCCTGAAAATTTCTGGAAAATAAACGTGGATGCGGCATGGGTTTCAAC
ACCTCCGTCGATGAGAATTGGTGCAATTCTCAGGAATTCCAATGGGGAAATGGTTGGGGCGATGTCTTCCTATGTAAACGTTGATTTCAAAGCTCCTCTAGCTGAATTGA
TGGCGATATGGGAAGGAATTAAAATGGCTAAATCATTAGGAGTTGGAAAAATAAATGTGGAAGCCGATTGTTCCCAAGCAATCAGGCATGATTACATGATGGATGGATTT
CAAGTAATTTCAATAGTATAG
Protein sequenceShow/hide protein sequence
MSLENNSQSPHVSSPERWVPPPENFWKINVDAAWVSTPPSMRIGAILRNSNGEMVGAMSSYVNVDFKAPLAELMAIWEGIKMAKSLGVGKINVEADCSQAIRHDYMMDGF
QVISIV