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Lag0024697 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024697
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:5047141..5047500
RNA-Seq ExpressionLag0024697
SyntenyLag0024697
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]1.4e-1138.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT+D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]1.9e-1138.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

RVW53162.1 putative ribonuclease H protein [Vitis vinifera]7.1e-1137.5Show/hide
Query:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF
        F W V H+ +NT+D LQ      AL P  C L  +  ET+DHLF+ CP+  G+W  L+Q T +     R    + ++ F+    S+R  ++ QA  +A  
Subjt:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF

Query:  WVIWNELNSRIF
        WV+W E N+RIF
Subjt:  WVIWNELNSRIF

RVW74148.1 putative ribonuclease H protein [Vitis vinifera]1.4e-1138.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT+D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

RVW92839.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.2e-1036.61Show/hide
Query:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF
        F W V H+ +NT+D LQ      A+ P  C L  +  ET+DHLF+ CP+  G+W  L+Q T +     R    + ++ F+    S+R  ++ QA  +A  
Subjt:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF

Query:  WVIWNELNSRIF
        WV+W E N+RIF
Subjt:  WVIWNELNSRIF

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein9.0e-1238.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

A0A438F0I5 Putative ribonuclease H protein3.4e-1137.5Show/hide
Query:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF
        F W V H+ +NT+D LQ      AL P  C L  +  ET+DHLF+ CP+  G+W  L+Q T +     R    + ++ F+    S+R  ++ QA  +A  
Subjt:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF

Query:  WVIWNELNSRIF
        WV+W E N+RIF
Subjt:  WVIWNELNSRIF

A0A438GPP0 Putative ribonuclease H protein6.9e-1238.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT+D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

A0A438I862 LINE-1 retrotransposable element ORF2 protein5.8e-1136.61Show/hide
Query:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF
        F W V H+ +NT+D LQ      A+ P  C L  +  ET+DHLF+ CP+  G+W  L+Q T +     R    + ++ F+    S+R  ++ QA  +A  
Subjt:  FSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVASF

Query:  WVIWNELNSRIF
        WV+W E N+RIF
Subjt:  WVIWNELNSRIF

A5BPI6 Uncharacterized protein6.9e-1238.6Show/hide
Query:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA
        +FF W V H+ +NT+D LQ      AL P  C L  E  ET+DHLF+ C M  G+W  L+Q T +     R    + +  F+    S+R  ++ QA  +A
Subjt:  RFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLI-QAFTVA

Query:  SFWVIWNELNSRIF
          WV+W E N+RIF
Subjt:  SFWVIWNELNSRIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAAAGAAATGGCAGATTCTTCTCGTGGTCCGTTATTCACCGTAGCTTGAATACAGATGATAGGCTCCAACGAATTTTTAAAGATTCTGCTTTGCTTCCGAGTCG
TTGCTCCCTTGGTCAAGAAAACTTTGAGACCTTGGATCACCTCTTCGTTCTTTGCCCGATGGCGTCCGGTATTTGGTCTCTCCTATATCAATCGACGGGTGTTATTTCTT
CCTATCATCGTCGGGCGGACAAACTCTATGCAAGTGCTTTCTCTTTCAAGATTGGTTCTCGGAGGAGTTTTTTGATCCAAGCTTTCACGGTGGCCTCCTTTTGGGTCATA
TGGAATGAGCTAAATAGTCGTATATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAAAGAAATGGCAGATTCTTCTCGTGGTCCGTTATTCACCGTAGCTTGAATACAGATGATAGGCTCCAACGAATTTTTAAAGATTCTGCTTTGCTTCCGAGTCG
TTGCTCCCTTGGTCAAGAAAACTTTGAGACCTTGGATCACCTCTTCGTTCTTTGCCCGATGGCGTCCGGTATTTGGTCTCTCCTATATCAATCGACGGGTGTTATTTCTT
CCTATCATCGTCGGGCGGACAAACTCTATGCAAGTGCTTTCTCTTTCAAGATTGGTTCTCGGAGGAGTTTTTTGATCCAAGCTTTCACGGTGGCCTCCTTTTGGGTCATA
TGGAATGAGCTAAATAGTCGTATATTCTGA
Protein sequenceShow/hide protein sequence
MFQRNGRFFSWSVIHRSLNTDDRLQRIFKDSALLPSRCSLGQENFETLDHLFVLCPMASGIWSLLYQSTGVISSYHRRADKLYASAFSFKIGSRRSFLIQAFTVASFWVI
WNELNSRIF