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Lag0024771 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024771
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:5651200..5656428
RNA-Seq ExpressionLag0024771
SyntenyLag0024771
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4401838.1 hypothetical protein G4B88_013125 [Cannabis sativa]3.5e-0726.19Show/hide
Query:  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQ
        PC++     +D  I  + S +        ++++L   T  LF D  +  +   TG G V       +  +   + P   +P   E  AL  GL+      
Subjt:  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQ

Query:  ITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR
        +T   ++SD  N +  + G+    S +   + QIR    SF   +  HVSR+ N +A +LAK AL  R
Subjt:  ITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR

XP_011465330.1 PREDICTED: uncharacterized protein LOC105351724 [Fragaria vesca subsp. vesca]1.6e-0729.17Show/hide
Query:  ECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDV
        E   + + +   +L+ D A   +    G GAVV   NG++ G +      +  P + E  AL HG++L ++M +T   +  D+ N I  I  ++   SD+
Subjt:  ECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDV

Query:  YHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSM
           +  +R M+   E++S+ HV +  N  A TLA++AL    SM
Subjt:  YHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSM

XP_016200263.1 uncharacterized protein LOC107641282 [Arachis ipaensis]1.3e-0631.88Show/hide
Query:  QDHTVQLFTDCAVRPHGEGTGYGAVVFGING-QVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDV---YHW
        Q HT +L+ D A   + EG+G G ++      Q+  ++ F   T +     E  AL+  LRL Q + IT  +VY DS   +Q + G       +   YH 
Subjt:  QDHTVQLFTDCAVRPHGEGTGYGAVVFGING-QVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDV---YHW

Query:  IMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR
           ++++  +F F+  +H++RE NTRAD L+K A  R+
Subjt:  IMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-0927.12Show/hide
Query:  RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGE
        +CEW+  +++       +N + R +           H P       +     +++L TD A R  G  T +G ++   +  +        P   +P + E
Subjt:  RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGE

Query:  VNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK
        +  ++ GL+       T   V SDS  AIQ+I+ +I T  D  +W+M+I+ ++  F F+SFSH SR+ N  A  LAK
Subjt:  VNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]7.9e-0729.63Show/hide
Query:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS
        V++ TD AV    EG+G G ++   N ++ G M  +   + TP + ++ A+  GL L  R+ +    V +DS  A+ +I    P   +   W+  IR  +
Subjt:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS

Query:  DSFEFLSFSHVSREGNTRADTLAKNALARRTSMLW
          F+ + F HV RE N  A  L +  ++ R   LW
Subjt:  DSFEFLSFSHVSREGNTRADTLAKNALARRTSMLW

TrEMBL top hitse value%identityAlignment
A0A2H0RMS8 Ribonuclease H1.1e-0635.11Show/hide
Query:  LFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGD--IPTTSDVYHWIMQIRRMS
        LFTD   R +    G GAV+F  N +V      Y  T  T  V E  A+I GL L     +T    Y DS  A++ + G   +        WI Q+R ++
Subjt:  LFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGD--IPTTSDVYHWIMQIRRMS

Query:  DSFEFLSFSHVSREGNTRADTLAKNALARRT
          FE + F+HV RE NT AD L    L + T
Subjt:  DSFEFLSFSHVSREGNTRADTLAKNALARRT

A0A6J1DX30 uncharacterized protein LOC1110248741.1e-0927.12Show/hide
Query:  RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGE
        +CEW+  +++       +N + R +           H P       +     +++L TD A R  G  T +G ++   +  +        P   +P + E
Subjt:  RCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGE

Query:  VNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK
        +  ++ GL+       T   V SDS  AIQ+I+ +I T  D  +W+M+I+ ++  F F+SFSH SR+ N  A  LAK
Subjt:  VNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAK

A0A6J1DZK3 uncharacterized protein LOC1110249683.8e-0729.63Show/hide
Query:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS
        V++ TD AV    EG+G G ++   N ++ G M  +   + TP + ++ A+  GL L  R+ +    V +DS  A+ +I    P   +   W+  IR  +
Subjt:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS

Query:  DSFEFLSFSHVSREGNTRADTLAKNALARRTSMLW
          F+ + F HV RE N  A  L +  ++ R   LW
Subjt:  DSFEFLSFSHVSREGNTRADTLAKNALARRTSMLW

A0A7J6I4A1 RNase H domain-containing protein1.7e-0726.19Show/hide
Query:  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQ
        PC++     +D  I  + S +        ++++L   T  LF D  +  +   TG G V       +  +   + P   +P   E  AL  GL+      
Subjt:  PCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQ

Query:  ITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR
        +T   ++SD  N +  + G+    S +   + QIR    SF   +  HVSR+ N +A +LAK AL  R
Subjt:  ITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARR

A0A803P3N7 Uncharacterized protein1.1e-0628.76Show/hide
Query:  NVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDS---SNAIQMIKGDIPTTSDVY
        N  ++ + QL+TD  +       G GAVV   NGQV   +        TP + E  AL  GL     ++I  + +++DS   +N I   K ++   +DV 
Subjt:  NVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDS---SNAIQMIKGDIPTTSDVY

Query:  HWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSMLWLGTAVQVN
          I+ I+     F   S  +  R+ NT A  +AK AL     ++W  T   +N
Subjt:  HWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSMLWLGTAVQVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0731.5Show/hide
Query:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS
        V +FTD A +   +  G+G V+         + +     +  P + E  AL   L+  Q + IT   + SDS   I  I  + P+T + Y  I  I  +S
Subjt:  VQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVNALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMS

Query:  DSFEFLSFSHVSREGNTRADTLAKNAL
          F  +SFS V R  N  AD LAK++L
Subjt:  DSFEFLSFSHVSREGNTRADTLAKNAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTAT
ATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATG
GAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAAT
GCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTAC
ATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTG
CGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTT
GTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAA
GCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTT
ACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGA
ATGGGGAACGACGGAACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTGATGGAATGGCATAAACGATGTGAATGGATATATGAATACATGGAGGAGACAAAAGTTGTACCTTGTACAAATAAAACACTAAGGAAGAGAGATGAGATTAT
ATCGCATGCGGCTTCTGATATCCATTTTCCCACCCAACTGGAGTGTGAGAATAATGTTCTTCAAGACCATACTGTGCAACTATTTACTGATTGTGCTGTTAGGCCGCATG
GAGAAGGGACTGGGTATGGGGCGGTGGTTTTCGGTATAAATGGGCAAGTCTGTGGTAATATGGAGTTTTATGATCCCACCTTGCATACGCCATTTGTAGGAGAGGTAAAT
GCTCTCATACATGGTCTTAGACTTCTGCAACGGATGCAAATTACATGCGCTCGTGTTTATTCGGATTCCTCAAATGCCATTCAGATGATTAAAGGAGATATTCCAACTAC
ATCTGATGTGTATCATTGGATAATGCAAATCAGAAGGATGTCTGATTCGTTTGAATTTTTATCATTCAGTCATGTATCTAGAGAAGGTAATACGAGGGCTGATACTCTTG
CGAAGAATGCTTTAGCACGGCGTACGTCTATGCTTTGGTTAGGTACTGCCGTACAGGTGAATGCTTTAGGGAGTGGTAGTCCTCAGTGTCATTGTAACCATATTGTTCTT
GTTTTAAGCGTTCGGAGGCGATCCATGGCTGAACTAGGTGGAAACGGGGCGTCTAGGAGCATCGGAGACCAAACAGAGTCGGACGAGCTCGACCTCGACCATGGCCAAAA
GCCCGATCCCTTCGGTCTTGGCCCGACCCATTGGCCCGTTTCGCCTCCGGGGTCCATCCTACAGTCCTATTTTTGGACTCGTGTCGGGTTGTTCTCGTCAGCTCCTTGTT
ACGTCATATACCAGGTAAATGGGGAGGACGATAATGGGATGGGTGGGGAGGACGATAATGGGGATGGGTGGGGAGGAAACGTCGAGCGTGTAGTTTTCAGGTGTGGGAGA
ATGGGGAACGACGGAACAAATTGA
Protein sequenceShow/hide protein sequence
MPVMEWHKRCEWIYEYMEETKVVPCTNKTLRKRDEIISHAASDIHFPTQLECENNVLQDHTVQLFTDCAVRPHGEGTGYGAVVFGINGQVCGNMEFYDPTLHTPFVGEVN
ALIHGLRLLQRMQITCARVYSDSSNAIQMIKGDIPTTSDVYHWIMQIRRMSDSFEFLSFSHVSREGNTRADTLAKNALARRTSMLWLGTAVQVNALGSGSPQCHCNHIVL
VLSVRRRSMAELGGNGASRSIGDQTESDELDLDHGQKPDPFGLGPTHWPVSPPGSILQSYFWTRVGLFSSAPCYVIYQVNGEDDNGMGGEDDNGDGWGGNVERVVFRCGR
MGNDGTN