; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024778 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024778
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:5690897..5692773
RNA-Seq ExpressionLag0024778
SyntenyLag0024778
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.9e-3051.52Show/hide
Query:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN
        KYDG  DP+ HLD Y  W   +G TEA +CR FS TLTG  + W+ +L  KSI SFKEL+R F TQF G  +R +P   LLT+KQ+  ESL  Y+ RF+ 
Subjt:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN

Query:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        E +QVEG  D V L   ISG++DE+L+ S G+
Subjt:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.0e-2749.24Show/hide
Query:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN
        ++DG  D V HLD YR WM  +G +EA KCR FS TL+G A+ W+ +L   SI SFK L++ F TQF+G R R +P   LLT+KQR  ESL+ Y+ RF+ 
Subjt:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN

Query:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        E +QVEG  + V+L A +S ++DE L  S G+
Subjt:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]6.4e-3047.92Show/hide
Query:  KAKAEAEAAVRVKYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPG
        KA+ + +     +YDG  DP+ HLD YR W   +   EA +CR FS TLTG A+ W+ +L   SI SFKEL+  F TQF+G R + KP   LLT+KQ+  
Subjt:  KAKAEAEAAVRVKYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPG

Query:  ESLNGYITRFSNEVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        ESL  Y+ RF+ E +QVEG  D VAL A +SG++DE+L+ S G+
Subjt:  ESLNGYITRFSNEVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.7e-2747.22Show/hide
Query:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE
        +DG  +PV HLD YR WM  +G ++A +CR FS TL G A+ W+ +L   SI SFK L+R F TQF+G R R +P   LLT+KQR  ESL+ Y+ RF+ E
Subjt:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE

Query:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR
         +Q+EG  D V+L A +SG++DE L  S  E       S +L R
Subjt:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]7.8e-2850.69Show/hide
Query:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE
        Y GK+D  +HL TYR+WM   GA+ A  CRAFSLTL   A++WY KL P SI SF +LS++   QF+GARD++ P    L VKQ   ESL   ITRF+ E
Subjt:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE

Query:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR
        VV+VE Y D VALT I+ GLQ  K   S+ + N  R  +  L R
Subjt:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR

TrEMBL top hitse value%identityAlignment
A0A2N9F1B5 Ribonuclease H1.7e-2547.29Show/hide
Query:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE
        +DG KDP+ HL++++  M   G  +   CRAF  TL G A+ W+ KL P S+ SF +LSRLF   F+G +   +P  +LL VKQ+ GE+L  Y+TRF+ E
Subjt:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE

Query:  VVQVEGYDDGVALTAIISGLQDEKLLNSV
         + V+G DD V LTA ISGLQ E  L S+
Subjt:  VVQVEGYDDGVALTAIISGLQDEKLLNSV

A0A6J1D3B7 uncharacterized protein LOC1110166191.4e-3051.52Show/hide
Query:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN
        KYDG  DP+ HLD Y  W   +G TEA +CR FS TLTG  + W+ +L  KSI SFKEL+R F TQF G  +R +P   LLT+KQ+  ESL  Y+ RF+ 
Subjt:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN

Query:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        E +QVEG  D V L   ISG++DE+L+ S G+
Subjt:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

A0A6J1D7D2 uncharacterized protein LOC1110183074.9e-2849.24Show/hide
Query:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN
        ++DG  D V HLD YR WM  +G +EA KCR FS TL+G A+ W+ +L   SI SFK L++ F TQF+G R R +P   LLT+KQR  ESL+ Y+ RF+ 
Subjt:  KYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSN

Query:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        E +QVEG  + V+L A +S ++DE L  S G+
Subjt:  EVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

A0A6J1DZ49 uncharacterized protein LOC1110248513.1e-3047.92Show/hide
Query:  KAKAEAEAAVRVKYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPG
        KA+ + +     +YDG  DP+ HLD YR W   +   EA +CR FS TLTG A+ W+ +L   SI SFKEL+  F TQF+G R + KP   LLT+KQ+  
Subjt:  KAKAEAEAAVRVKYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPG

Query:  ESLNGYITRFSNEVVQVEGYDDGVALTAIISGLQDEKLLNSVGE
        ESL  Y+ RF+ E +QVEG  D VAL A +SG++DE+L+ S G+
Subjt:  ESLNGYITRFSNEVVQVEGYDDGVALTAIISGLQDEKLLNSVGE

A0A6J1E1E7 uncharacterized protein LOC1110255488.4e-2847.22Show/hide
Query:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE
        +DG  +PV HLD YR WM  +G ++A +CR FS TL G A+ W+ +L   SI SFK L+R F TQF+G R R +P   LLT+KQR  ESL+ Y+ RF+ E
Subjt:  YDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSIDSFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNE

Query:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR
         +Q+EG  D V+L A +SG++DE L  S  E       S +L R
Subjt:  VVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCCTTGCAACTTGACCTTAAACCACTTATTCACCTTGTTGACTTAAGCTTCGGAGTGGACATGGCTTCGCACCACATCGATGCAAGGTACACAAGGGCGGAAGG
ACTTCAGGCCCAGTTGAAATTGGCCCAAAGGAGCAAAAACCCACCAAAGGTGGACCAACACCTCGGCCTCGGCCCAAAGCCGAGGCCGAGGATCTGGTCGGCCTCGGCCC
AAGGCCGAGGCCGACCAGGCGAACCGGCCCGTCTGCTGCCTAGGCCACCTGGATGGATCCCCTTAGGCCCGGGAGCAGGAGTCACGGCAGGTGAGCGCTTGGCCAGATTT
TGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGACAAGAATTGGCACGGGAGCATTGCAAGCCGGTGCGGAGAGGAAGAATGAACGAGATGGGACAAAGTTTGGCAGAGA
TTTTGGGTATCCTGAAACAGCCGAATCCGAGCACAGGTACCAGAAGAGTTTCGCGCGGGATCGTGAGAAGGGGAAAAGGGTTTACGACGAGGAAGAAGAGGAAACAGGTA
GTGCAACCAGCAAACCGCGCAAGCCGAGGGATGGCAAAGAGCTGGCCTTGAAGGAGCCAGGTCCAAGCAGAAGGGTAGAGCGCAAAAGCGCACTGGATATTGTAGATGAG
GTCAGTACAGTGGGTGCATGTGGTAAGGTAGGAGCCGAGGCCGAGGCCAAGGCAAGGGAAAAATTAGAGCTTGAAGCAAGGATCCGGGTCGAGATTGAAAGTAAGTTGAG
AGCCGAGGCCGAAGCGGCGGCCAAGGCAAAGGCCGAGGCCGAGGCGGCGGTACGGGTCAAGTATGATGGGAAGAAAGACCCGGTTCAGCACCTGGATACCTACCGGGCAT
GGATGGGGTTTCATGGGGCCACCGAGGCAACAAAATGTCGTGCGTTCTCTCTAACCTTAACTGGGATAGCACAACAGTGGTACGGCAAGTTACCACCTAAGTCAATTGAT
TCATTCAAAGAATTGTCACGCCTTTTTGCCACGCAGTTTTTGGGTGCTAGGGACCGAAGGAAGCCGCAATTCAACCTGTTGACCGTCAAACAAAGGCCGGGGGAAAGTCT
GAATGGGTATATCACACGGTTCAGCAACGAAGTCGTGCAGGTAGAGGGGTACGATGATGGAGTAGCACTAACTGCAATTATTTCAGGGTTGCAAGATGAAAAACTGTTAA
ACTCCGTAGGGGAGAGCAACCGCGAACGTATGCTGAGTTCGTCGCTAGGGCGCAGAAGTACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATCCTTGCAACTTGACCTTAAACCACTTATTCACCTTGTTGACTTAAGCTTCGGAGTGGACATGGCTTCGCACCACATCGATGCAAGGTACACAAGGGCGGAAGG
ACTTCAGGCCCAGTTGAAATTGGCCCAAAGGAGCAAAAACCCACCAAAGGTGGACCAACACCTCGGCCTCGGCCCAAAGCCGAGGCCGAGGATCTGGTCGGCCTCGGCCC
AAGGCCGAGGCCGACCAGGCGAACCGGCCCGTCTGCTGCCTAGGCCACCTGGATGGATCCCCTTAGGCCCGGGAGCAGGAGTCACGGCAGGTGAGCGCTTGGCCAGATTT
TGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGACAAGAATTGGCACGGGAGCATTGCAAGCCGGTGCGGAGAGGAAGAATGAACGAGATGGGACAAAGTTTGGCAGAGA
TTTTGGGTATCCTGAAACAGCCGAATCCGAGCACAGGTACCAGAAGAGTTTCGCGCGGGATCGTGAGAAGGGGAAAAGGGTTTACGACGAGGAAGAAGAGGAAACAGGTA
GTGCAACCAGCAAACCGCGCAAGCCGAGGGATGGCAAAGAGCTGGCCTTGAAGGAGCCAGGTCCAAGCAGAAGGGTAGAGCGCAAAAGCGCACTGGATATTGTAGATGAG
GTCAGTACAGTGGGTGCATGTGGTAAGGTAGGAGCCGAGGCCGAGGCCAAGGCAAGGGAAAAATTAGAGCTTGAAGCAAGGATCCGGGTCGAGATTGAAAGTAAGTTGAG
AGCCGAGGCCGAAGCGGCGGCCAAGGCAAAGGCCGAGGCCGAGGCGGCGGTACGGGTCAAGTATGATGGGAAGAAAGACCCGGTTCAGCACCTGGATACCTACCGGGCAT
GGATGGGGTTTCATGGGGCCACCGAGGCAACAAAATGTCGTGCGTTCTCTCTAACCTTAACTGGGATAGCACAACAGTGGTACGGCAAGTTACCACCTAAGTCAATTGAT
TCATTCAAAGAATTGTCACGCCTTTTTGCCACGCAGTTTTTGGGTGCTAGGGACCGAAGGAAGCCGCAATTCAACCTGTTGACCGTCAAACAAAGGCCGGGGGAAAGTCT
GAATGGGTATATCACACGGTTCAGCAACGAAGTCGTGCAGGTAGAGGGGTACGATGATGGAGTAGCACTAACTGCAATTATTTCAGGGTTGCAAGATGAAAAACTGTTAA
ACTCCGTAGGGGAGAGCAACCGCGAACGTATGCTGAGTTCGTCGCTAGGGCGCAGAAGTACATAA
Protein sequenceShow/hide protein sequence
MQSLQLDLKPLIHLVDLSFGVDMASHHIDARYTRAEGLQAQLKLAQRSKNPPKVDQHLGLGPKPRPRIWSASAQGRGRPGEPARLLPRPPGWIPLGPGAGVTAGERLARF
WHQQLAPSVGKTRIGTGALQAGAERKNERDGTKFGRDFGYPETAESEHRYQKSFARDREKGKRVYDEEEEETGSATSKPRKPRDGKELALKEPGPSRRVERKSALDIVDE
VSTVGACGKVGAEAEAKAREKLELEARIRVEIESKLRAEAEAAAKAKAEAEAAVRVKYDGKKDPVQHLDTYRAWMGFHGATEATKCRAFSLTLTGIAQQWYGKLPPKSID
SFKELSRLFATQFLGARDRRKPQFNLLTVKQRPGESLNGYITRFSNEVVQVEGYDDGVALTAIISGLQDEKLLNSVGESNRERMLSSSLGRRST