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Lag0024839 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024839
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:6241659..6242117
RNA-Seq ExpressionLag0024839
SyntenyLag0024839
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2711776.1 hypothetical protein I3760_04G092800 [Carya illinoinensis]3.3e-0539.08Show/hide
Query:  KIMEAMTILEGIKAIRNTCLQKKIP-LQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA
        + +EA+ +L G++     C+Q  IP L +E+D L ++  L G  + L++   I+ DI R  + LQ V+  H NRL N VAH LAR A
Subjt:  KIMEAMTILEGIKAIRNTCLQKKIP-LQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.9e-0535Show/hide
Query:  IMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQANPPLR
        I EA+ +LEG++  +   L    P  +ESDAL V++ +   E   S+V L+IDDIL F        F H  RLAN VAH LA+ A             L 
Subjt:  IMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQANPPLR

Query:  DCGHIFWAPNLPFWFSVLIM
        + G   W+ + P     L+M
Subjt:  DCGHIFWAPNLPFWFSVLIM

XP_010667704.1 PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]1.5e-0537.61Show/hide
Query:  WEMKIMEAMTILEGIK-AIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQA
        WE++I EA   LEGIK AIR    Q    + +ESD L +I+ L     G S   L+++DIL  SSQL AV ++   R  N VAH LA        H    
Subjt:  WEMKIMEAMTILEGIK-AIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQA

Query:  NPPLRDCGHIFWAPNLP
             + GH +W  ++P
Subjt:  NPPLRDCGHIFWAPNLP

XP_010682311.1 PREDICTED: uncharacterized protein LOC104897185 [Beta vulgaris subsp. vulgaris]5.7e-0538.37Show/hide
Query:  WEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLA
        WEM++ EA  + EG++  +N  ++K I   VESD L VI  L  +  G S+  LII+DI  F      V ++   R  N VAH +A
Subjt:  WEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLA

XP_010686140.1 PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]5.7e-0535.92Show/hide
Query:  DSSGSTICFEMKKMDHKWEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAH
        D+ GS +     ++   WE  I EA  +LEG+   +   LQK I   +ESD   V++ L  +E G S   LIIDDI+        V ++   R+ N VAH
Subjt:  DSSGSTICFEMKKMDHKWEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAH

Query:  RLA
         LA
Subjt:  RLA

TrEMBL top hitse value%identityAlignment
A0A2I4DDN2 uncharacterized protein LOC1089791224.0e-0430.56Show/hide
Query:  MHDSSGSTICFEMKKMDHKWEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTV
        + D  G  +    K  D   ++  +E +T+L G++      LQK   L +ESD L +++ L  ++D  S    +I +        Q ++  H NR+ N V
Subjt:  MHDSSGSTICFEMKKMDHKWEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTV

Query:  AHRLARKA
        AHRLAR A
Subjt:  AHRLARKA

A0A2P6QAC1 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein4.0e-0443.75Show/hide
Query:  VESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSL
        +ESD+  +I  L  EED  SEV  + DD   + S  Q++E  H  R AN VAHRLA  A++  L
Subjt:  VESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSL

A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein4.0e-0431.31Show/hide
Query:  MEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA--AFFSLHCDQANPP
        +EA+ + EG++  R   ++    L+VE DAL +I  L+  E+ L+E+  +++ +     + + V + H  + AN VAH LAR A  +  S+ C +  PP
Subjt:  MEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA--AFFSLHCDQANPP

A0A5C7GQX3 RNase H domain-containing protein9.4e-0635Show/hide
Query:  IMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQANPPLR
        I EA+ +LEG++  +   L    P  +ESDAL V++ +   E   S+V L+IDDIL F        F H  RLAN VAH LA+ A             L 
Subjt:  IMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAFFSLHCDQANPPLR

Query:  DCGHIFWAPNLPFWFSVLIM
        + G   W+ + P     L+M
Subjt:  DCGHIFWAPNLPFWFSVLIM

A0A5C7GW84 RNase H domain-containing protein4.0e-0438.37Show/hide
Query:  KIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA
        +I EA+ ++EG++  +N       P  +ESDAL V+R +  +    SEV L++DDIL F  +     F++  RLA  VAH LA+ A
Subjt:  KIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGACTCATCTGGATCCACTATCTGTTTCGAAATGAAAAAGATGGATCACAAATGGGAGATGAAAATCATGGAAGCCATGACCATTTTGGAAGGCATTAAAGCTAT
TCGAAATACCTGCCTTCAAAAGAAGATTCCACTGCAAGTGGAATCAGATGCGCTGGCAGTGATCAGAGTCTTGACTGGAGAAGAAGACGGCCTCTCGGAGGTGAAATTGA
TTATCGATGACATCCTCCGCTTTTCTTCTCAGCTTCAAGCCGTCGAATTCGCTCACTGTAATCGCCTTGCCAACACAGTAGCCCACCGGTTGGCAAGGAAAGCTGCGTTT
TTTTCTTTGCATTGCGATCAAGCAAATCCCCCGTTGAGGGATTGTGGACATATTTTTTGGGCCCCTAATCTTCCTTTTTGGTTTTCCGTCCTAATTATGAGGGTAGTTGT
ATGGGTTATTAGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGACTCATCTGGATCCACTATCTGTTTCGAAATGAAAAAGATGGATCACAAATGGGAGATGAAAATCATGGAAGCCATGACCATTTTGGAAGGCATTAAAGCTAT
TCGAAATACCTGCCTTCAAAAGAAGATTCCACTGCAAGTGGAATCAGATGCGCTGGCAGTGATCAGAGTCTTGACTGGAGAAGAAGACGGCCTCTCGGAGGTGAAATTGA
TTATCGATGACATCCTCCGCTTTTCTTCTCAGCTTCAAGCCGTCGAATTCGCTCACTGTAATCGCCTTGCCAACACAGTAGCCCACCGGTTGGCAAGGAAAGCTGCGTTT
TTTTCTTTGCATTGCGATCAAGCAAATCCCCCGTTGAGGGATTGTGGACATATTTTTTGGGCCCCTAATCTTCCTTTTTGGTTTTCCGTCCTAATTATGAGGGTAGTTGT
ATGGGTTATTAGTTTTTAA
Protein sequenceShow/hide protein sequence
MHDSSGSTICFEMKKMDHKWEMKIMEAMTILEGIKAIRNTCLQKKIPLQVESDALAVIRVLTGEEDGLSEVKLIIDDILRFSSQLQAVEFAHCNRLANTVAHRLARKAAF
FSLHCDQANPPLRDCGHIFWAPNLPFWFSVLIMRVVVWVISF