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Lag0024911 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024911
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:6917558..6917914
RNA-Seq ExpressionLag0024911
SyntenyLag0024911
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]3.6e-0732.77Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRK---VNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI
        +NS A+W E+   GG+SWV+ DS GS I    K+++ +  +K +E +A+ EGL+    + +    +  P+I     LE+  IL     D  E  N+VD+I
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRK---VNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI

Query:  SSFSKEMGRIDFLHCPETK
               G I F   P  K
Subjt:  SSFSKEMGRIDFLHCPETK

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.1e-0835.65Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF
        +N DAA   KD+  G+  +VRD+ G  +A G+K+ + R ++   EAEAI  GL+  NQ+   +   +IVE+D  EV+ +L   K   +E   I+ D+   
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF

Query:  SKEMGRIDFLHCPET
        SKE  ++ F   P T
Subjt:  SKEMGRIDFLHCPET

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.6e-0733.33Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF
        +N++AAW      GGI W++RD  G  I A  + I+    I  +E  AI EGLR + Q   ++  P+ +E+DSLE I +L  +  D +E   ++++I   
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF

Query:  SKEMGRIDFLH
         K+M  +   H
Subjt:  SKEMGRIDFLH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-0736.08Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI
        +N+DA+W +    GGI W++R   G  + AG + ++    +K +EA AI EGLR +  L      P+ +E DS EV S+L  K++D ++T  +V++I
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.1e-0731.9Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQ-----LFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVD
        +N+DAAW      GGI W++RD  G  I A  + I+    I  +E  AI EGLR + Q     + +++  P+ +E+DSLE I +L  +  D +E   +++
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQ-----LFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVD

Query:  DISSFSKEMGRIDFLH
        +I    ++M  +   H
Subjt:  DISSFSKEMGRIDFLH

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132165.1e-0737.78Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSET
        +N+DA+W E+ + GGI W++ D  G  + AG  KI+ + +I ++E   I  GL+ +N    Q+R P+ +E+DS+EVI ++  KK+D   T
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSET

A0A6J1DNV9 uncharacterized protein LOC1110224036.0e-0836.08Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI
        +N+DA+W +    GGI W++R   G  + AG + ++    +K +EA AI EGLR +  L      P+ +E DS EV S+L  K++D ++T  +V++I
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDI

A0A6J5UAY2 Reverse transcriptase domain-containing protein4.3e-0637.17Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF
        +N DAAW  + + GG+ WVVRDS G  + AG K         +MEAEAIRE L    Q        + VE+DSL+VI ++ G+ +       IV DI   
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF

Query:  SKEMGRIDFLHCP
          +     FL+ P
Subjt:  SKEMGRIDFLHCP

A0A6J5VSP2 Uncharacterized protein7.3e-0633.05Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF
        +NSDAAW  +   GG+ WV+RDS G  + AG +          ME  AIR  L   ++    +   +IVE+DS + I +L G+    S+ + IV DI   
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF

Query:  SKEMGRIDFLHCPETKTQ
           + R+ F+  P +  Q
Subjt:  SKEMGRIDFLHCPETKTQ

A0A6J5XPQ2 RNase H domain-containing protein3.3e-0634.78Show/hide
Query:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF
        +N DAAW  +   GG+ WV+RDS G  + AG +          ME  AIR  L + +     N   VIVE+DS   IS+L G+    S+ + IV DI   
Subjt:  MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSF

Query:  SKEMGRIDFLHCPET
           + R+ F+  P +
Subjt:  SKEMGRIDFLHCPET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein3.0e-0424.79Show/hide
Query:  NSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSFS
        N DA+  E D   G+ W++R+S G+ +  G+ K + RM  +  E  A+   ++  +         VI E D+  V  ++  K D+    K+ +D I S+ 
Subjt:  NSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSFS

Query:  KEMGRIDFLHCPETKTQ
              +F+     + Q
Subjt:  KEMGRIDFLHCPETKTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCCGACGCCGCTTGGTTCGAGAAAGATAAAGCGGGAGGAATCAGCTGGGTTGTTCGTGATTCAAGCGGATCCCCGATAGCTGCTGGCTTGAAAAAGATCAAGAT
AAGAATGCAAATTAAATCCATGGAAGCTGAGGCAATTAGGGAAGGATTGAGGAAAGTTAATCAACTTTTCAAGCAAAATCGCCCTCCCGTGATTGTCGAAGCGGATTCTC
TGGAAGTGATCAGCATTTTGCAAGGGAAGAAGGATGATTTCTCGGAGACAAAGAACATAGTAGACGACATTTCTTCCTTCAGCAAGGAGATGGGCAGAATTGATTTTCTT
CACTGCCCAGAAACCAAAACACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCCGACGCCGCTTGGTTCGAGAAAGATAAAGCGGGAGGAATCAGCTGGGTTGTTCGTGATTCAAGCGGATCCCCGATAGCTGCTGGCTTGAAAAAGATCAAGAT
AAGAATGCAAATTAAATCCATGGAAGCTGAGGCAATTAGGGAAGGATTGAGGAAAGTTAATCAACTTTTCAAGCAAAATCGCCCTCCCGTGATTGTCGAAGCGGATTCTC
TGGAAGTGATCAGCATTTTGCAAGGGAAGAAGGATGATTTCTCGGAGACAAAGAACATAGTAGACGACATTTCTTCCTTCAGCAAGGAGATGGGCAGAATTGATTTTCTT
CACTGCCCAGAAACCAAAACACAGTAG
Protein sequenceShow/hide protein sequence
MNSDAAWFEKDKAGGISWVVRDSSGSPIAAGLKKIKIRMQIKSMEAEAIREGLRKVNQLFKQNRPPVIVEADSLEVISILQGKKDDFSETKNIVDDISSFSKEMGRIDFL
HCPETKTQ