CuGenDBv2

Gene ID	Lag0024912
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA ligase 1
Genome location	chr10:6926177..6928272
RNA-Seq Expression	Lag0024912
Synteny	Lag0024912
Gene Ontology terms	GO:0007131 - reciprocal meiotic recombination (biological process) GO:0099086 - synaptonemal structure (cellular component) GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146600.1 DNA ligase 1 isoform X1 [Cucumis sativus]

2.4e-97

92.13

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

XP_022140180.1 DNA ligase 1 [Momordica charantia]

6.2e-98

92.59

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLSDDLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIAQLEESLKRKKQD KTFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFPA+D
Subjt:  GSFLETGSDEDFPADD

XP_022927498.1 DNA ligase 1 [Cucurbita moschata]

2.8e-98

93.06

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

XP_023001751.1 DNA ligase 1 [Cucurbita maxima]

1.6e-98

93.06

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

XP_023520366.1 DNA ligase 1 [Cucurbita pepo subsp. pepo]

3.1e-97

92.13

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR S++DLTSSD+RKRTN+DIDLDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIR MIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRW7 Uncharacterized protein

1.1e-97

92.13

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTR+RKR SDTDL+SSDQRK+TNDDIDLDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A5D3DS94 DNA ligase 1 isoform X1

2.1e-96

91.67

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        M N+K+PTAKTR+RKR SDTDLTSS+QR RTNDDIDLDLDLSDDLKGI+SALNQI+ERA KDD KKNEETISSVATE+RTMIEEVKSK EKDRQ+FAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD KTFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFL+TGSDEDFPADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1CEE2 DNA ligase 1

3.0e-98

92.59

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGN+K+PTAKTRTRKR SD DLTSSDQRKRT +DIDLDLDLSDDLKGI+SALNQIRE+AQKDDQKKNEETISSV++EIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQAL+EKFTKE+ATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACA+KIAQLEESLKRKKQD KTFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFPA+D
Subjt:  GSFLETGSDEDFPADD

A0A6J1EL64 DNA ligase 1

1.3e-98

93.06

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR SD+DLTSSD+RKRTN+DIDLDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDF ADD
Subjt:  GSFLETGSDEDFPADD

A0A6J1KJH3 DNA ligase 1

7.9e-99

93.06

Show/hide

Query:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL
        MGNMK+P AKTRTRKR SD DLTSSD+RKRTN+DIDLDLDLSDDLKGI+SALNQI+ERAQKDDQKKNEETISSV+TEIRTMIEEVKSKFEKDRQSFAKAL
Subjt:  MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKAL

Query:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL
        SKSSKECENCLKDETAKFQALYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRER+LISEQEKACAEKIAQLEESLKRKKQD +TFS LRKTL
Subjt:  SKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTL

Query:  GSFLETGSDEDFPADD
        GSFLETGSDEDFP DD
Subjt:  GSFLETGSDEDFPADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G33793.1 unknown protein

2.9e-61

67.58

Show/hide

Query:  DLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA
        +LD+D+S D KGIMSAL Q RE+A +D +KK EE+ISSV+TE+++ I+E+KSK EK+RQ+F+KALSKSSKECEN LKDE AKF+ L++KF K+KA HLQ 
Subjt:  DLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQA

Query:  IKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLET-GSDEDFPADD
        +KDTISKFEE+KERL+ +YEQLRK+E+ +I+EQEK C EK+AQLEESLK+KK+  KTFS LRKTLGSFLE   SDE+FP D+
Subjt:  IKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLET-GSDEDFPADD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAACATGAAATTGCCTACTGCTAAAACAAGAACCAGGAAGCGAGGCTCTGATACCGATCTCACGAGCTCCGATCAGAGGAAGCGGACCAACGATGATATCGACCT
CGATCTCGACCTTTCCGACGATCTCAAAGGGATAATGTCGGCCCTGAATCAGATCAGAGAGAGAGCTCAGAAGGACGACCAGAAGAAGAATGAAGAGACCATCTCAAGCG
TAGCGACTGAGATCAGAACAATGATTGAGGAGGTGAAATCTAAATTTGAGAAGGACAGGCAAAGTTTTGCAAAAGCACTATCGAAAAGCTCAAAAGAGTGTGAAAATTGT
TTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTTACAAAAGAAAAAGCTACACATCTTCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAA
AGAAAGGCTATTCGCAAAATATGAACAACTGAGAAAGAGAGAAAGGAACCTGATATCTGAGCAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGA
AAAGGAAAAAACAGGATGGTAAGACTTTCAGCTTTCTGCGGAAAACTCTTGGTTCATTTCTTGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGNMKLPTAKTRTRKRGSDTDLTSSDQRKRTNDDIDLDLDLSDDLKGIMSALNQIRERAQKDDQKKNEETISSVATEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENC
LKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERNLISEQEKACAEKIAQLEESLKRKKQDGKTFSFLRKTLGSFLETGSDEDFPADD

Lag0024912 (gene) of Sponge gourd (AG-4) v1 genome