; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024954 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024954
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:7242937..7248522
RNA-Seq ExpressionLag0024954
SyntenyLag0024954
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1467.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M  L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1467.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.4e-1467.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1467.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
TYK28989.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1467.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein7.0e-1567.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M  L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5A7TQ06 Retrotransposon gag protein7.0e-1567.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5A7VRG7 Retrotransposon gag protein7.0e-1567.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5D3BBF9 Gag protease polyprotein7.0e-1567.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
A0A5D3DZZ8 Retrotransposon gag protein9.1e-1567.14Show/hide
Query:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
        FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  II TNP NEG
Subjt:  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAAATGAGAGCTTTT
AAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGCAGCTTAAAGAAAACTTTAAGTTAGTCTCTATAAACAAAAA
AAAAGGTTCTTTGCTCTGCAATTCCTTCCCCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTT
CCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTACAGTTCCTTCTCCCAAATTTGAAGGTTCT
CACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCACGTGCTTCACTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTT
CGCTGCAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATT
CGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCACAAGTTCGAAGGTTCCCACGCGCTTCGCT
GCAGTTCCTTCTTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGA
AGGTTATCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTTTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAG
TTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTT
CTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTTCTTCTCCCTGAGTTCGAAGGTTCTCACGCGCTTCAATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCG
CTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGC
GCTTCTCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTC
CAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCG
TTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCAC
TGCTCCTTCTCCAAGTTCGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGG
TGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCTTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAG
CAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGATATCACTGCAAGCGAATTTGAG
GAGGCCACCATTCATTCTAGGGGATTGAGATTCGGGGATTCAGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGA
GAATTCAGAAGATCCAATATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACC
GATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGCTAACAAGCCGATTCGACAAATCATCAAGCCAATCGACCGATCAAGAAGATCAA
CAAGTCAGCAGACTGATCATCCAAGAAGATCAACAAGTTAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAGAGGATC
AACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAAATGAGAGCTTTT
AAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGCAGCTTAAAGAAAACTTTAAGTTAGTCTCTATAAACAAAAA
AAAAGGTTCTTTGCTCTGCAATTCCTTCCCCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTT
CCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTACAGTTCCTTCTCCCAAATTTGAAGGTTCT
CACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCACGTGCTTCACTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTT
CGCTGCAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATT
CGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCACAAGTTCGAAGGTTCCCACGCGCTTCGCT
GCAGTTCCTTCTTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGA
AGGTTATCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTTTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAG
TTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTT
CTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTTCTTCTCCCTGAGTTCGAAGGTTCTCACGCGCTTCAATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTC
CAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCG
CTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGC
GCTTCTCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTC
CAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCG
TTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCAC
TGCTCCTTCTCCAAGTTCGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGG
TGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCTTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAG
CAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGATATCACTGCAAGCGAATTTGAG
GAGGCCACCATTCATTCTAGGGGATTGAGATTCGGGGATTCAGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGA
GAATTCAGAAGATCCAATATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACC
GATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGCTAACAAGCCGATTCGACAAATCATCAAGCCAATCGACCGATCAAGAAGATCAA
CAAGTCAGCAGACTGATCATCCAAGAAGATCAACAAGTTAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAGAGGATC
AACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCTAA
Protein sequenceShow/hide protein sequence
MFGVHLHSTFSFPKAKCLHIEEKSIFNIVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGLIKTMTKMRAF
KCKSSLSQEPKLHDAPSPHELKRQLKENFKLVSINKKKGSLLCNSFPKFDGSHAALLEFLLPKFEGSHALRCSSFSPRSKVLTRCVAVLSPQVRRFTHFATVPSPKFEGS
HALRCSSFLQVRRFSTAAVHSSKFKGSHVASLQFLPPSSKVLTCFTAVPSLQGRRFSRAALQFFLPKFEGSRTSLQFLLPNLKVLTRFALQFLPPSSKVLTRFVQFLPPI
RRFSRASVKFLPPSLKVLTHFAAVPSPQVRRFPRASLQFLLHSSKVLTRFAAVPSPKFEGSHVASLQFLPPSLKVITCFAAVPSLQGRRFSRAALQFFLPKFEGSRTSLQ
FLLPNSKVLTRFALQFLPPSSKVLTRFVQFLPPIRRFSRTSLQFLPPSSKVLTRFAAVPSSQLKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFL
QVRRFSRVSLQFLLPEFEGSHALQCSSFLPKFEVPSSKFEGSHALRCTVPSSKFEGSHALRCYLPPSSKVLSRAAAAPSSKFEGSLTRFARSFSKFEGASLHCSFSKFEG
ASLRCYLPPSSKVLSRAAAVPSSKFEGSLTRFARSFSKFEGASLRCYLPPSSKVLSRAAAVPSSKFEGSLTRFVRSFSKFEGASLRCYFSKFEGASLHCSFSKFEGASLH
CSFSKFEGNYSHQSDWSRQVVKSLQLNLMTTVVGESGDEVTASESDDDRCRRVESGDHPCRLLRSPNKMGTGLAGVHEGESGDYPCRLLRSPNEIGDWSSRSDITASEFE
EATIHSRGLRFGDSDQRTQSPENSARVQSHQKSESLENSEDPIFRIQPTQDSEDHQANRPIKKINKSADRSSNRSSEKINKSVDRSSKKINKLTSRFDKSSSQSTDQEDQ
QVSRLIIQEDQQVSRPIIKPIIREDQQVSRPIIQRGSTSHNRPIQEIIKPAGRSSKKINKPISRSKRSSS