; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024963 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024963
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:7336021..7338880
RNA-Seq ExpressionLag0024963
SyntenyLag0024963
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PUZ62909.1 LOW QUALITY PROTEIN: hypothetical protein GQ55_3G024500 [Panicum hallii var. hallii]1.3e-0432.63Show/hide
Query:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG
        EE  K  +++W  WN RN+ +   KR E   L    + + +D LKL       +H     W+KP   F K+N++ A+    G GG G+V+ D  G
Subjt:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG

PVH61391.1 hypothetical protein PAHAL_3G022900 [Panicum hallii]1.3e-0432.63Show/hide
Query:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG
        EE  K  +++W  WN RN+ +   KR E   L    + + +D LKL       +H     W+KP   F K+N++ A+    G GG G+V+ D  G
Subjt:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG

XP_013583472.1 PREDICTED: uncharacterized protein LOC106292430 [Brassica oleracea var. oleracea]2.0e-0528.83Show/hide
Query:  LDDGYNWNKEELTKGSI--VMWSIWNYRNRTQAESKRPEANFLIKSTEESIKDLKLSYP------NKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG
        L+    + KEE+ +G +  ++W +W   N      K   A+  +K   E +++ K            P   A +V W  P P   K NT+ AW ++ GIG
Subjt:  LDDGYNWNKEELTKGSI--VMWSIWNYRNRTQAESKRPEANFLIKSTEESIKDLKLSYP------NKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG

Query:  GLGWVVHDSSG
        G+GW++ D  G
Subjt:  GLGWVVHDSSG

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.6e-0528.46Show/hide
Query:  DGYNW-----NKEELTKGSIVMWSIWNYRNRT--------QAESKRPEANFLIKSTEES--IKDLKLSYPNK---PRSHAS----QVSWEKPNPPFWKLN
        D +NW     + EE+    ++ W IW  RNR+        + +  R    F+  + ++   I   + S  N    PR   +     V W  P    WKLN
Subjt:  DGYNW-----NKEELTKGSIVMWSIWNYRNRT--------QAESKRPEANFLIKSTEES--IKDLKLSYPNK---PRSHAS----QVSWEKPNPPFWKLN

Query:  TNVAWKEDRGIGGLGWVVHDSSG
        T+ +W E+R +GG+GW++ D  G
Subjt:  TNVAWKEDRGIGGLGWVVHDSSG

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.9e-0630.63Show/hide
Query:  KEELTKGSIVMWSIWNYRNRTQAESKRPEA--------NFLIKST--------EESIKDLKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG
        +EE  +  I+ W IW  RN++  +   PE          ++I S         + + KDL L    +  + A    W+ P    WKLNTN AW+ D   G
Subjt:  KEELTKGSIVMWSIWNYRNRTQAESKRPEA--------NFLIKST--------EESIKDLKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG

Query:  GLGWVVHDSSG
        G+GW++ D  G
Subjt:  GLGWVVHDSSG

TrEMBL top hitse value%identityAlignment
A0A2T7E4Z8 RNase H domain-containing protein6.2e-0532.63Show/hide
Query:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG
        EE  K  +++W  WN RN+ +   KR E   L    + + +D LKL       +H     W+KP   F K+N++ A+    G GG G+V+ D  G
Subjt:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG

A0A2T8KGT8 RNase H domain-containing protein6.2e-0532.63Show/hide
Query:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG
        EE  K  +++W  WN RN+ +   KR E   L    + + +D LKL       +H     W+KP   F K+N++ A+    G GG G+V+ D  G
Subjt:  EELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSG

A0A6J1CP26 uncharacterized protein LOC1110134124.3e-0630.63Show/hide
Query:  KEELTKGSIVMWSIWNYRNRTQAESKRPEA--------NFLIKST--------EESIKDLKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG
        +EE  +  I+ W IW  RN++  +   PE          ++I S         + + KDL L    +  + A    W+ P    WKLNTN AW+ D   G
Subjt:  KEELTKGSIVMWSIWNYRNRTQAESKRPEA--------NFLIKST--------EESIKDLKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIG

Query:  GLGWVVHDSSG
        G+GW++ D  G
Subjt:  GLGWVVHDSSG

A0A6J1CQG0 uncharacterized protein LOC1110132163.7e-0528.46Show/hide
Query:  DGYNW-----NKEELTKGSIVMWSIWNYRNRT--------QAESKRPEANFLIKSTEES--IKDLKLSYPNK---PRSHAS----QVSWEKPNPPFWKLN
        D +NW     + EE+    ++ W IW  RNR+        + +  R    F+  + ++   I   + S  N    PR   +     V W  P    WKLN
Subjt:  DGYNW-----NKEELTKGSIVMWSIWNYRNRT--------QAESKRPEANFLIKSTEES--IKDLKLSYPNK---PRSHAS----QVSWEKPNPPFWKLN

Query:  TNVAWKEDRGIGGLGWVVHDSSG
        T+ +W E+R +GG+GW++ D  G
Subjt:  TNVAWKEDRGIGGLGWVVHDSSG

A0A7N2LJB8 RNase H domain-containing protein1.4e-0428.28Show/hide
Query:  WNKEELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSGS
        W +E++    +  W IW  RN  +    R  A  L K T+  ++D L  ++  +P   +++V+W+ P PP++K N + A    +   G+G V+ D  G+
Subjt:  WNKEELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKD-LKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLGWVVHDSSGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCCCTTTCTGATAGGGTGGTCTTCAAAGGATTATTGGAGCTGGATGATGGATATAATTGGAACAAGGAAGAGTTGACTAAGGGATCCATTGTGATGTGGAGCAT
ATGGAACTACAGGAACAGAACCCAAGCAGAAAGCAAAAGGCCAGAAGCAAACTTCCTAATTAAATCCACTGAAGAAAGTATCAAAGACTTGAAATTATCTTACCCGAACA
AGCCTAGGAGCCACGCGAGTCAAGTTTCGTGGGAGAAACCGAATCCTCCTTTCTGGAAATTGAACACCAACGTCGCCTGGAAAGAAGACAGAGGAATTGGAGGGCTCGGT
TGGGTTGTACATGACTCGAGCGGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCCCTTTCTGATAGGGTGGTCTTCAAAGGATTATTGGAGCTGGATGATGGATATAATTGGAACAAGGAAGAGTTGACTAAGGGATCCATTGTGATGTGGAGCAT
ATGGAACTACAGGAACAGAACCCAAGCAGAAAGCAAAAGGCCAGAAGCAAACTTCCTAATTAAATCCACTGAAGAAAGTATCAAAGACTTGAAATTATCTTACCCGAACA
AGCCTAGGAGCCACGCGAGTCAAGTTTCGTGGGAGAAACCGAATCCTCCTTTCTGGAAATTGAACACCAACGTCGCCTGGAAAGAAGACAGAGGAATTGGAGGGCTCGGT
TGGGTTGTACATGACTCGAGCGGATCTTGA
Protein sequenceShow/hide protein sequence
MPSLSDRVVFKGLLELDDGYNWNKEELTKGSIVMWSIWNYRNRTQAESKRPEANFLIKSTEESIKDLKLSYPNKPRSHASQVSWEKPNPPFWKLNTNVAWKEDRGIGGLG
WVVHDSSGS