; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0024974 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024974
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription factor PCF8-like
Genome locationchr10:7402897..7403494
RNA-Seq ExpressionLag0024974
SyntenyLag0024974
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:2000032 - regulation of secondary shoot formation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583970.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia]5.1e-2380.28Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE
        +RRLRSS   GKVYTSKG R R+LRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAID LS P ETE
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE

XP_008443015.1 PREDICTED: transcription factor TCP10-like [Cucumis melo]7.3e-4667.05Show/hide
Query:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY
        MGSL    D+K A++GRR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE  +CR + +
Subjt:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY

Query:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
         L  PS      SSSSSQFQSYPLQNFSQKGNLSV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_011653401.1 transcription factor PCF8 [Cucumis sativus]4.3e-4665.34Show/hide
Query:  MGSLKRSLDEKTAELGRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE
        MGSL    D+ T ++ RR+RRL S +D+G   GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLL NAKSAIDALS P +TE  +CR +
Subjt:  MGSLKRSLDEKTAELGRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE

Query:  SY-LSFP-SMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S+ L  P S ++S  SSSSSQFQSYPLQNFSQKGNLSV  P+I N +  EFSG +PP   SQSN+G GF  FP WE
Subjt:  SY-LSFP-SMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_023001760.1 transcription factor PCF8-like [Cucurbita maxima]3.5e-4872.37Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVP-SSSSSQFQS
        +RRLRSS   GKVYTSKGLR RRLRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAIDALS P ETE   R     SFPSMA+SVP SSSSSQF +
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVP-SSSSSQFQS

Query:  YPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        YPL+NF + GNLSVLSP+I N +PAEFSG +PP  +SQSN  +G  SFP WE
Subjt:  YPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

XP_038893685.1 transcription factor TCP10-like [Benincasa hispida]9.9e-5169.14Show/hide
Query:  MGSLKRSL---DEKTAELGRRDRRLRSSDSG--GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSET-EGECRN
        MGS + SL   DEKTA+LGRRDRRLRSS     GKVYTS+GLR RR RLSAPTAI+FYDVQDRLG DRPTE +DWLL+NAKSAIDALS P ET + E R 
Subjt:  MGSLKRSL---DEKTAELGRRDRRLRSSDSG--GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSET-EGECRN

Query:  ESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        + ++S       VPSSSSSQFQSYPL+NFSQKGNL+V SP+I N +P EFSG +PP   SQSNV TGF SFP WE
Subjt:  ESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

TrEMBL top hitse value%identityAlignment
A0A0A0LUP1 TCP domain-containing protein2.1e-4665.34Show/hide
Query:  MGSLKRSLDEKTAELGRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE
        MGSL    D+ T ++ RR+RRL S +D+G   GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLL NAKSAIDALS P +TE  +CR +
Subjt:  MGSLKRSLDEKTAELGRRDRRLRS-SDSG---GKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNE

Query:  SY-LSFP-SMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        S+ L  P S ++S  SSSSSQFQSYPLQNFSQKGNLSV  P+I N +  EFSG +PP   SQSN+G GF  FP WE
Subjt:  SY-LSFP-SMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A1S3B7T4 transcription factor TCP10-like3.6e-4667.05Show/hide
Query:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY
        MGSL    D+K A++GRR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE  +CR + +
Subjt:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY

Query:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
         L  PS      SSSSSQFQSYPLQNFSQKGNLSV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A5A7UTZ9 Transcription factor TCP10-like3.6e-4667.05Show/hide
Query:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY
        MGSL    D+K A++GRR+RRL SS     GKVYTSKGLR RRLRLSAPTAI+FYD+QDRLG  RPTEA+DWLLQNAK AIDALS P +TE  +CR + +
Subjt:  MGSLKRSLDEKTAELGRRDRRLRSS--DSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETE-GECRNESY

Query:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
         L  PS      SSSSSQFQSYPLQNFSQKGNLSV SP+I N + A FSG +PP   SQSNVG GF  FP WE
Subjt:  -LSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A6J1KM30 transcription factor PCF8-like1.7e-4872.37Show/hide
Query:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVP-SSSSSQFQS
        +RRLRSS   GKVYTSKGLR RRLRLSAPTAIQFYD+QDRLG++RPTEA+DWLLQNAKSAIDALS P ETE   R     SFPSMA+SVP SSSSSQF +
Subjt:  DRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVP-SSSSSQFQS

Query:  YPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE
        YPL+NF + GNLSVLSP+I N +PAEFSG +PP  +SQSN  +G  SFP WE
Subjt:  YPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE

A0A6P6XJM7 transcription factor PCF5-like4.5e-1746.75Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVPSSSSSQF
        GR+DR         KVYTSKG R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++ AK+AID L   +E      NE  L    MAA  PS+ S+  
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVPSSSSSQF

Query:  QSYPLQNFSQKGNLSVLSPV---IFNDSPAEFSGQEPPSSISQSNVGTGFTSFP
         +   Q F Q+   S L  +     +D+P   SG  PP   +QS   T  T FP
Subjt:  QSYPLQNFSQKGNLSVLSPV---IFNDSPAEFSGQEPPSSISQSNVGTGFTSFP

SwissProt top hitse value%identityAlignment
A2WM14 Transcription factor PCF51.1e-1564.18Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL
        GR+DR         KV T++G R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++NAK AID L
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL

A2WV68 Transcription factor PCF78.2e-1659.72Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE
        GR+DR         KV T++GLR RR+RL+A TAI+FYDVQDRLG+DRP++AVDWL++NAK+AID L   +E
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE

Q8LT05 Transcription factor PCF78.2e-1659.72Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE
        GR+DR         KV T++GLR RR+RL+A TAI+FYDVQDRLG+DRP++AVDWL++NAK+AID L   +E
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSE

Q8LT07 Transcription factor PCF51.1e-1564.18Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL
        GR+DR         KV T++G R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++NAK AID L
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDAL

Q9MAH8 Transcription factor TCP35.7e-1766.67Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP
        GR+DR         KV T+KG R RR+RLSAPTAIQFYDVQDRLGFDRP++AVDWL+  AKSAID L+  PP
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP

Arabidopsis top hitse value%identityAlignment
AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 34.0e-1866.67Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP
        GR+DR         KV T+KG R RR+RLSAPTAIQFYDVQDRLGFDRP++AVDWL+  AKSAID L+  PP
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--PP

AT2G31070.1 TCP domain protein 107.6e-1742.86Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVPSSSSSQF
        GR+DR         KV+TSKG R RR+RLSA TAIQFYDVQDRLG+DRP++AVDWL++ AK+AID L     T    R E   + P     V    ++  
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVPSSSSSQF

Query:  QSYPLQNFSQKGNLSVLSP
          +   N   +  +    P
Subjt:  QSYPLQNFSQKGNLSVLSP

AT3G15030.1 TCP family transcription factor 43.8e-1633.15Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------
        GR+DR         KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+                                
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------

Query:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN
          PP + + + + +  + F    A  PS++ S F    + + S    +    PVI + + A         +  Q PP  +S++N
Subjt:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN

AT3G15030.2 TCP family transcription factor 43.8e-1633.15Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------
        GR+DR         KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+                                
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------

Query:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN
          PP + + + + +  + F    A  PS++ S F    + + S    +    PVI + + A         +  Q PP  +S++N
Subjt:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN

AT3G15030.3 TCP family transcription factor 43.8e-1633.15Show/hide
Query:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------
        GR+DR         KV T+KG R RR+RLSA TAIQFYDVQDRLGFDRP++AVDWL++ AK++ID L+                                
Subjt:  GRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALS--------------------------------

Query:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN
          PP + + + + +  + F    A  PS++ S F    + + S    +    PVI + + A         +  Q PP  +S++N
Subjt:  --PPSETEGECRNESYLSFPSMAASVPSSSSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPA--------EFSGQEPPSSISQSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTCTGAAGCGTTCCCTCGATGAGAAGACGGCGGAGCTTGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGACAGCGGCGGCAAGGTTTACACTTCGAAAGGGCT
CCGAGGAAGGCGGCTCCGGCTGTCGGCTCCGACGGCCATTCAATTCTACGACGTCCAGGATCGCCTTGGCTTCGACCGACCCACTGAGGCCGTCGATTGGCTTCTTCAGA
ATGCCAAATCCGCCATTGATGCACTCTCTCCACCATCAGAAACAGAGGGAGAGTGTAGAAACGAGAGCTATTTGAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCT
TCTTCCTCCCAGTTCCAGAGTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTGAGTCCAGTGATTTTTAATGACTCGCCGGCGGAATTTTCCGGGCA
GGAGCCGCCGTCTTCTATAAGTCAGAGCAATGTCGGAACTGGTTTTACTTCCTTTCCGACGTGGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTCTGAAGCGTTCCCTCGATGAGAAGACGGCGGAGCTTGGCCGGAGAGACCGTCGCCTCCGTTCGAGCGACAGCGGCGGCAAGGTTTACACTTCGAAAGGGCT
CCGAGGAAGGCGGCTCCGGCTGTCGGCTCCGACGGCCATTCAATTCTACGACGTCCAGGATCGCCTTGGCTTCGACCGACCCACTGAGGCCGTCGATTGGCTTCTTCAGA
ATGCCAAATCCGCCATTGATGCACTCTCTCCACCATCAGAAACAGAGGGAGAGTGTAGAAACGAGAGCTATTTGAGCTTCCCTTCTATGGCTGCTTCTGTTCCTTCGTCT
TCTTCCTCCCAGTTCCAGAGTTACCCACTTCAAAATTTCTCCCAAAAAGGCAACCTCTCTGTTTTGAGTCCAGTGATTTTTAATGACTCGCCGGCGGAATTTTCCGGGCA
GGAGCCGCCGTCTTCTATAAGTCAGAGCAATGTCGGAACTGGTTTTACTTCCTTTCCGACGTGGGAGTAG
Protein sequenceShow/hide protein sequence
MGSLKRSLDEKTAELGRRDRRLRSSDSGGKVYTSKGLRGRRLRLSAPTAIQFYDVQDRLGFDRPTEAVDWLLQNAKSAIDALSPPSETEGECRNESYLSFPSMAASVPSS
SSSQFQSYPLQNFSQKGNLSVLSPVIFNDSPAEFSGQEPPSSISQSNVGTGFTSFPTWE