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Lag0024976 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0024976
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:7414234..7415097
RNA-Seq ExpressionLag0024976
SyntenyLag0024976
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]7.4e-1826.97Show/hide
Query:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA
        L R  V V   C +C   SE+  H L+ C  A +VWR                                       W +W +RN +VH     +  D   
Subjt:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA

Query:  WILDYIVEYRKANRLNPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDC
        WI ++  E+R AN LN K V+S Q +     +GE   +N DA+F + + K+ +G +IRD   + IA  +S    C +    EA   LEG+ LA  + +  
Subjt:  WILDYIVEYRKANRLNPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDC

Query:  MTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS
        + + SD   +++ +  +  +  + + AI+     L +S +++S++ V R+ N V+H +A+  L L S
Subjt:  MTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-2229.15Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWR---------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYR
        C IC  + E+  HA F CKRA ++WR                                        W IWNDRN L+H + +  +E +C W+  ++  + 
Subjt:  CPICKRQSETTEHALFCCKRATKVWR---------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYR

Query:  KANRLN--PKSVVSVQDACALFGQGENII--MNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSD
        +A   N  P++  + +     +    ++   +NTDAA       +S GC+IRD   +L+A  +       +P+ AE   ILEGL+ A   N   + V SD
Subjt:  KANRLN--PKSVVSVQDACALFGQGENII--MNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSD

Query:  YLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS--QEWTPNFP
         L+ ++ IR E +      + ++ +I  L   F  ISF H  RQ NR +H LAK G+   S    W  NFP
Subjt:  YLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS--QEWTPNFP

XP_030479177.1 uncharacterized protein LOC115696415 [Cannabis sativa]3.3e-1826.22Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK
        CPICK ++ET +HAL  C RA K WR                                       WA+WN RN +V+N+     ++   W L+Y  ++  
Subjt:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK

Query:  ANR--LNPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLV
        A +  +      S               + TDAA D +NRK S+G V+ D D+ + A  ++  +    P  AEA  I + ++ A+ +++    +++D   
Subjt:  ANR--LNPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLV

Query:  LVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP
        +V  +    N + S +D +L +I +L+S    ++  +V R+ N ++H LAK GL L ++  W  + P
Subjt:  LVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP

XP_030479388.1 uncharacterized protein LOC115696635 [Cannabis sativa]1.3e-1728.14Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWRAWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEY--RKANRLNPKSVVSVQDACALFGQGENIIMNTDAAFDVI
        CP+CK   ET +HAL  C R+ K W+     + RN + H+       D   W + +  +Y   + +++ P +  S Q     F    +  + TDAA D+ 
Subjt:  CPICKRQSETTEHALFCCKRATKVWRAWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEY--RKANRLNPKSVVSVQDACALFGQGENIIMNTDAAFDVI

Query:  NRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHV
         +K S+G  + +    ++A LA   + C +P+ AEA  ++  L+ A  + +    + +D   +V  +   G L  SS+D ++  I +L+S    +   HV
Subjt:  NRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHV

Query:  DRQFNRVSHDLAKIGLYLSSQ-EWTPNFPVS
        +R+FN ++H +AK G+ L S+  W  + P S
Subjt:  DRQFNRVSHDLAKIGLYLSSQ-EWTPNFPVS

XP_030505004.1 uncharacterized protein LOC115719975 [Cannabis sativa]1.8e-1625.19Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK
        CP+CK ++ET +HAL  C R+ KVWR                                       WA+WN RN  V N+     ++   W L++  ++  
Subjt:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK

Query:  ANRLNPKSVVSVQDACAL-FGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVL
        A + +     S   + ++       + + TDAA D +NR+ S+G V+ D D  + A  ++  +    P  AEA  I + ++ A+ + +    ++ D   +
Subjt:  ANRLNPKSVVSVQDACAL-FGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVL

Query:  VKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP
        V  +    N + S  D IL ++ +L+S    ++   V R  N ++H LAK+GL L ++  W  + P
Subjt:  VKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248741.1e-2229.15Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWR---------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYR
        C IC  + E+  HA F CKRA ++WR                                        W IWNDRN L+H + +  +E +C W+  ++  + 
Subjt:  CPICKRQSETTEHALFCCKRATKVWR---------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYR

Query:  KANRLN--PKSVVSVQDACALFGQGENII--MNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSD
        +A   N  P++  + +     +    ++   +NTDAA       +S GC+IRD   +L+A  +       +P+ AE   ILEGL+ A   N   + V SD
Subjt:  KANRLN--PKSVVSVQDACALFGQGENII--MNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSD

Query:  YLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS--QEWTPNFP
         L+ ++ IR E +      + ++ +I  L   F  ISF H  RQ NR +H LAK G+   S    W  NFP
Subjt:  YLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS--QEWTPNFP

A0A803P2U6 Uncharacterized protein9.4e-1926.82Show/hide
Query:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK
        CP+CK  +ET  HAL  C RA K WR                                       WA+WN RN +VHN+   S ++   W L+Y  ++  
Subjt:  CPICKRQSETTEHALFCCKRATKVWR--------------------------------------AWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRK

Query:  ANRL----NPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDY
        A +     +  +  S Q     F  G  I   TDAA D +N+K S+G V+ D D+ + A  ++  +    P  AEA  + + ++ A+ +++    +++D 
Subjt:  ANRL----NPKSVVSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDY

Query:  LVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ
          +V  +    + + S +D +L +I +L+S    ++  +V R+ N ++H LAK GL L ++
Subjt:  LVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ

A0A803PJK4 Uncharacterized protein2.2e-2026.76Show/hide
Query:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA
        L + H+     C +C+  +E+  HALF CKRA KVWR                                       W+IW +RN   H       E    
Subjt:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA

Query:  WILDYIVEYRKANRLNP---KSVVSVQDACALFGQGEN-----IIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRL
          L Y+ EY+ + +  P   ++ V   +   +  +  N     + +NTDAA D +NR S  G ++RD D  ++A ++     CF P   EA  +   L+ 
Subjt:  WILDYIVEYRKANRLNP---KSVVSVQDACALFGQGEN-----IIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRL

Query:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP
         + +N+    + +D L++VK ++   +L+ S   ++L DI  LMS+F  +   HV R  N  +H LAK  L +  +  W    P
Subjt:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP

A0A803PK99 Uncharacterized protein3.9e-2528.77Show/hide
Query:  NLWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRC
        N  + H+P   TCP+C+  +ET  HALF CKRA KVWR                                       W IW +RN   H       E   
Subjt:  NLWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRC

Query:  AWILDYIVEYRKANRLNPKSV--------VSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLR
           L Y+ EY+ A +  P ++        V       L      + +NTDAA DV+NR S  G ++RD +  ++A ++     CF P   EA  +   L+
Subjt:  AWILDYIVEYRKANRLNPKSV--------VSVQDACALFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLR

Query:  LARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP
          + +NI    + +D L++VK +  + N + S   ++L DI  LMS+F  +   HV +  N  +H LAK  L +  +  W   FP
Subjt:  LARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP

A0A803PM29 Uncharacterized protein4.5e-2126.76Show/hide
Query:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA
        L + H+     C +C+  +E+  HALF CKRA KVWR                                       W+IW +RN   H       E    
Subjt:  LWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRA--------------------------------------WAIWNDRNLLVHNRPIPSIEDRCA

Query:  WILDYIVEYRKANRLNPKSVVSV-----QDACA---LFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRL
          + Y+ EY+ + +  P  + +      +   A   L    + + +NTDAA D +NR SS G ++RD D  ++A ++     CF P   EA  +   L+ 
Subjt:  WILDYIVEYRKANRLNPKSVVSV-----QDACA---LFGQGENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRL

Query:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP
         + +N+    + +D L++VK ++   +L+ S   ++L DI  LMS+F  +   HV R  N  +H LAK  L +  +  W    P
Subjt:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSSQ-EWTPNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein3.0e-0923.64Show/hide
Query:  VEGTCPICKRQSETTEHALFCCKRATKVWR-------------------------------------------AWAIWNDRNLLVHNR----PIPSIEDR
        ++ +CP C R++E+  HALF C  AT  WR                                            W IW  RN +V N+    P  ++   
Subjt:  VEGTCPICKRQSETTEHALFCCKRATKVWR-------------------------------------------AWAIWNDRNLLVHNR----PIPSIEDR

Query:  CAWILDYIVEYRKANRLNPKSVVSVQDACALFGQ--GENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIA----RLASSSNVCFNPICAEAATILEGLRL
         A   D++    ++++  P     + +    +       +  N DA FDV   +++ G +IR+   T I+    +LA +S    NP+ AE   +L  L+ 
Subjt:  CAWILDYIVEYRKANRLNPKSVVSVQDACALFGQ--GENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIA----RLASSSNVCFNPICAEAATILEGLRL

Query:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS
                + +  D   L+  I G     +SS+   L DI    + F  I F  + R+ N+++H LAK G   S+
Subjt:  ARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVSHDLAKIGLYLSS

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0629.23Show/hide
Query:  ENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIH
        + + + TDAA+    +    G VIR+  +       S++     P+ AEA  +   L+ A+ + I  +++ SD   L+ AI  E     +    I++DI 
Subjt:  ENIIMNTDAAFDVINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIH

Query:  DLMSSFHMISFMHVDRQFNRVSHDLAKIGL
        +L   F  +SF  V R  NRV+ +LAK  L
Subjt:  DLMSSFHMISFMHVDRQFNRVSHDLAKIGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAATCTTTGGCGGCATCATGTTCCGGTGGAGGGTACTTGTCCTATTTGTAAGAGGCAGTCCGAGACGACAGAGCACGCTTTGTTTTGTTGCAAGCGGGCTACAAA
GGTTTGGCGAGCTTGGGCGATATGGAATGATAGGAATCTTTTGGTTCATAATCGACCTATCCCTAGCATTGAGGATCGGTGTGCCTGGATTCTTGATTATATTGTTGAGT
ATCGTAAGGCTAATCGACTGAATCCCAAGTCCGTAGTGTCAGTGCAGGATGCTTGTGCTCTGTTTGGGCAGGGGGAAAATATTATCATGAATACGGATGCAGCCTTCGAT
GTGATTAATCGTAAATCTAGTCTTGGTTGTGTGATTAGGGATAAGGACGACACTTTGATAGCTAGATTAGCATCGTCTTCCAATGTTTGTTTCAATCCAATTTGTGCAGA
AGCTGCGACTATTCTTGAAGGTCTGCGTTTGGCTCGTCGGTTGAATATTGACTGTATGACGGTCATGTCTGATTATTTAGTCTTAGTTAAAGCTATAAGGGGGGAAGGGA
ATTTAGATTATTCGAGTATAGATGCAATCTTGTGGGATATTCATGATCTAATGTCTTCCTTTCATATGATTAGCTTCATGCATGTCGACCGTCAATTTAATAGGGTCTCC
CATGATTTGGCTAAGATAGGCCTTTACTTAAGTTCACAAGAGTGGACTCCAAATTTTCCAGTCAGTTATTGTACCCCTCGGAGAGCTTCTTTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAATCTTTGGCGGCATCATGTTCCGGTGGAGGGTACTTGTCCTATTTGTAAGAGGCAGTCCGAGACGACAGAGCACGCTTTGTTTTGTTGCAAGCGGGCTACAAA
GGTTTGGCGAGCTTGGGCGATATGGAATGATAGGAATCTTTTGGTTCATAATCGACCTATCCCTAGCATTGAGGATCGGTGTGCCTGGATTCTTGATTATATTGTTGAGT
ATCGTAAGGCTAATCGACTGAATCCCAAGTCCGTAGTGTCAGTGCAGGATGCTTGTGCTCTGTTTGGGCAGGGGGAAAATATTATCATGAATACGGATGCAGCCTTCGAT
GTGATTAATCGTAAATCTAGTCTTGGTTGTGTGATTAGGGATAAGGACGACACTTTGATAGCTAGATTAGCATCGTCTTCCAATGTTTGTTTCAATCCAATTTGTGCAGA
AGCTGCGACTATTCTTGAAGGTCTGCGTTTGGCTCGTCGGTTGAATATTGACTGTATGACGGTCATGTCTGATTATTTAGTCTTAGTTAAAGCTATAAGGGGGGAAGGGA
ATTTAGATTATTCGAGTATAGATGCAATCTTGTGGGATATTCATGATCTAATGTCTTCCTTTCATATGATTAGCTTCATGCATGTCGACCGTCAATTTAATAGGGTCTCC
CATGATTTGGCTAAGATAGGCCTTTACTTAAGTTCACAAGAGTGGACTCCAAATTTTCCAGTCAGTTATTGTACCCCTCGGAGAGCTTCTTTTCATTAA
Protein sequenceShow/hide protein sequence
MVNLWRHHVPVEGTCPICKRQSETTEHALFCCKRATKVWRAWAIWNDRNLLVHNRPIPSIEDRCAWILDYIVEYRKANRLNPKSVVSVQDACALFGQGENIIMNTDAAFD
VINRKSSLGCVIRDKDDTLIARLASSSNVCFNPICAEAATILEGLRLARRLNIDCMTVMSDYLVLVKAIRGEGNLDYSSIDAILWDIHDLMSSFHMISFMHVDRQFNRVS
HDLAKIGLYLSSQEWTPNFPVSYCTPRRASFH