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Lag0025019 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025019
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:7803488..7804050
RNA-Seq ExpressionLag0025019
SyntenyLag0025019
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023876296.1 uncharacterized protein LOC111988743 [Quercus suber]7.2e-1429.94Show/hide
Query:  MSVDKFEEFVVMSRWVWSRRNKELFE-------------EVVMGEKGDSGE-------GVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGE
        ++ D+FE F+V +  +W++RN  +                  + E   S +        + A  W+ P  P YKLN D A+ ++LN S IGAI+ N KGE
Subjt:  MSVDKFEEFVVMSRWVWSRRNKELFE-------------EVVMGEKGDSGE-------GVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGE

Query:  VMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKF
        VM  +      V D +  E +A R+ +   +DAGFS +V+E D+++V+      G +LS++G +V++++ ++  L++
Subjt:  VMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKF

XP_023885847.1 keratin, type I cytoskeletal 13-like [Quercus suber]2.7e-1330.68Show/hide
Query:  FEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVE---------------------AVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLT
        FE F+V S  +W++RN+ +    +M  +G +   ++                      + W PP    YKLN D A+  DLN S  GAI+ NE+GEVM  
Subjt:  FEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVE---------------------AVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLT

Query:  LMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKFCEV
        +       L+    EA+A R+ +   ++AGFSR+V+E D++ V+    S   N S +G + E+I+ + R L++  +
Subjt:  LMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKFCEV

XP_023928118.1 uncharacterized protein LOC112039474 [Quercus suber]7.9e-1330.68Show/hide
Query:  MSVDKFEEFVVMSRWVWSRRN------------------KELFEEV--VMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGE
        +S+++FE FV+ S  +W++RN                  KE  +E     G+       +    W PP    +KLN D  V   L+ S +GA++ NE GE
Subjt:  MSVDKFEEFVVMSRWVWSRRN------------------KELFEEV--VMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGE

Query:  VMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK
        VM T++  V  V+D  V E +A R  +     AGF+ +VVE D+ SV+K   +   +LS +G ++++I+ ++R  +
Subjt:  VMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK

XP_030932920.1 uncharacterized protein LOC115958649 [Quercus lobata]6.1e-1343.97Show/hide
Query:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL
        W PP    YKLN D A   DL  + IGAIV NEKGEVM  +      V   D  E +A R  L   VDAGFSR+++E D+S+V+    S   N S  G +
Subjt:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL

Query:  VEEIRGISRELKFCEV
        V++IR + R L + EV
Subjt:  VEEIRGISRELKFCEV

XP_030969688.1 uncharacterized protein LOC115989965 [Quercus lobata]4.7e-1334.38Show/hide
Query:  DKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGV-------EAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVD
        ++ E F+V +  +W++RN  L  E+ M E   + + +       E   W PP  P +KLN D A+ ++ + S  GA++ NE+GEVM  L  +   V   +
Subjt:  DKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGV-------EAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVD

Query:  VLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK
          E MA R+ +   VDAGFS +++E DS +V+K   S   +LS  G +V +I+ I R L+
Subjt:  VLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK

TrEMBL top hitse value%identityAlignment
A0A2N9F2A9 RNase H domain-containing protein2.8e-1133.33Show/hide
Query:  MSVDKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEA
        +S  + + F ++S  +W RRN+   ++         G  VE V W PP   +YK+N D AV  D N + IG IV N +GEVM +L   + F   V+ LEA
Subjt:  MSVDKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEA

Query:  MAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK
         A R  +    D GF++ V+E DS +VV          +  G ++++I+ I++ L+
Subjt:  MAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK

A0A7N2KT26 Uncharacterized protein2.8e-1137.07Show/hide
Query:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL
        W PP    +KLN D A+   LN S +GA++ NEKGEV+  ++     V D +  E +A R+ L   +DA FS +V E D+ +V+K   S G N S++G +
Subjt:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL

Query:  VEEIRGISRELKFCEV
        +E+I  ++  L++  V
Subjt:  VEEIRGISRELKFCEV

A0A7N2LKG2 RNase H domain-containing protein5.0e-1333.75Show/hide
Query:  MSVDKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEA
        +S  +FE F+V + ++W +RN      V+ G K               + P +KLN D A+  DLN S IGA++ NE GEV+  ++     V D +  E 
Subjt:  MSVDKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEA

Query:  MAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKFCEV
        +A R+     +DAGFS +V E D ++V+K   S G N S++G ++E+IR ++  L++  V
Subjt:  MAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKFCEV

A0A7N2LM50 RNase H domain-containing protein2.3e-1334.38Show/hide
Query:  DKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGV-------EAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVD
        ++ E F+V +  +W++RN  L  E+ M E   + + +       E   W PP  P +KLN D A+ ++ + S  GA++ NE+GEVM  L  +   V   +
Subjt:  DKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGV-------EAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVD

Query:  VLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK
          E MA R+ +   VDAGFS +++E DS +V+K   S   +LS  G +V +I+ I R L+
Subjt:  VLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELK

A0A7N2RFA1 Uncharacterized protein5.0e-1339.66Show/hide
Query:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL
        W PP    +KLN D A+  DL  S IGAI+ NE+GEVM  +    + VLD    E +A R  L   +D GFS +V+E DS+ V+   +S   NLS++G +
Subjt:  WIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAVVDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFL

Query:  VEEIRGISRELKFCEV
         ++I+ +   L + EV
Subjt:  VEEIRGISRELKFCEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTGGATAAATTTGAAGAGTTTGTGGTGATGAGTCGGTGGGTATGGAGCAGGAGGAATAAGGAGCTATTTGAGGAAGTTGTTATGGGCGAGAAAGGGGACAGTGG
TGAGGGGGTGGAAGCTGTGTGTTGGATTCCTCCTGAATTTCCTAATTATAAGCTAAATACAGATATTGCAGTGAATAGGGATCTCAATCTCAGCAATATTGGGGCTATTG
TCATAAATGAGAAAGGGGAAGTGATGCTTACCTTGATGAGATTGGTGGAGTTTGTGCTTGATGTGGATGTGTTGGAAGCAATGGCAATTCGCGAAGGGCTGGCAGCTGTA
GTGGATGCCGGCTTCTCGCGGGTGGTGGTGGAGACGGACTCGTCAAGCGTGGTGAAGCAGTTTCAGTCCGACGGGTACAATCTTTCGAAGATGGGCTTTCTGGTGGAGGA
AATAAGAGGCATCTCTCGGGAGTTGAAGTTCTGTGAGGTCGGGTGGTGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTGGATAAATTTGAAGAGTTTGTGGTGATGAGTCGGTGGGTATGGAGCAGGAGGAATAAGGAGCTATTTGAGGAAGTTGTTATGGGCGAGAAAGGGGACAGTGG
TGAGGGGGTGGAAGCTGTGTGTTGGATTCCTCCTGAATTTCCTAATTATAAGCTAAATACAGATATTGCAGTGAATAGGGATCTCAATCTCAGCAATATTGGGGCTATTG
TCATAAATGAGAAAGGGGAAGTGATGCTTACCTTGATGAGATTGGTGGAGTTTGTGCTTGATGTGGATGTGTTGGAAGCAATGGCAATTCGCGAAGGGCTGGCAGCTGTA
GTGGATGCCGGCTTCTCGCGGGTGGTGGTGGAGACGGACTCGTCAAGCGTGGTGAAGCAGTTTCAGTCCGACGGGTACAATCTTTCGAAGATGGGCTTTCTGGTGGAGGA
AATAAGAGGCATCTCTCGGGAGTTGAAGTTCTGTGAGGTCGGGTGGTGCAGTTGA
Protein sequenceShow/hide protein sequence
MSVDKFEEFVVMSRWVWSRRNKELFEEVVMGEKGDSGEGVEAVCWIPPEFPNYKLNTDIAVNRDLNLSNIGAIVINEKGEVMLTLMRLVEFVLDVDVLEAMAIREGLAAV
VDAGFSRVVVETDSSSVVKQFQSDGYNLSKMGFLVEEIRGISRELKFCEVGWCS