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Lag0025041 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025041
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:8001434..8001775
RNA-Seq ExpressionLag0025041
SyntenyLag0025041
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381178.1 uncharacterized protein LOC107174642 [Citrus sinensis]4.2e-0532.38Show/hide
Query:  SWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLVSEFR
        SWYKVNVDA+      RAG  ++VR+  G+VM  +  +      ++  E + +  G++LV+++GL  +I++ DS+ V  L+ +  M    E+G L+S+ +
Subjt:  SWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLVSEFR

Query:  REVSA
          +S+
Subjt:  REVSA

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.0e-0740.37Show/hide
Query:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        P    ++KVNVDA+F +  F AG  I++RD    V+L A     HV  + L E L   +G+ L +E GL+   +E DS +VF LL+     D SE+GVL 
Subjt:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

Query:  SEFRREVSA
        S  R  VS+
Subjt:  SEFRREVSA

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]4.2e-0535.51Show/hide
Query:  YKVNVDASFCEDLFRAGTR-IVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVF-LLLQDVAMVDLSELGVLVSEFR
        +K+  DASF    F AG   I++RD  GQV+  A    +HV S+D  E L  V+G+R+ +E G+  I+LE DS+R++ L  +D     LS+ G ++   +
Subjt:  YKVNVDASFCEDLFRAGTR-IVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVF-LLLQDVAMVDLSELGVLVSEFR

Query:  REVSAHL
          ++  L
Subjt:  REVSAHL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.0e-0639.36Show/hide
Query:  YKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        YK+N DASF      AG  I++R++ GQVM  A    +++ S+D+ E +  V+G++L  ++G+  +ILE DS R+F L    +  DLSE G +V
Subjt:  YKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.0e-0838.18Show/hide
Query:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        P      KVNVDA+F ++ F AG  +++RD  G V L A         +D  EG  + +G+ L VE G +   +E DS+R+F LL     VD SE+GVL 
Subjt:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

Query:  SEFRREVSAH
        S  +  +S+H
Subjt:  SEFRREVSAH

TrEMBL top hitse value%identityAlignment
A0A3L6SPT0 Uncharacterized protein1.0e-0429.03Show/hide
Query:  WYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGV
        W K+N DA++        + +V+R+  G++++ AA ++ ++  + + E L   DGMRL +E G   +ILE+D++ V  L++    +  S  G+
Subjt:  WYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGV

A0A6J1C467 uncharacterized protein LOC1110077759.8e-0840.37Show/hide
Query:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        P    ++KVNVDA+F +  F AG  I++RD    V+L A     HV  + L E L   +G+ L +E GL+   +E DS +VF LL+     D SE+GVL 
Subjt:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

Query:  SEFRREVSA
        S  R  VS+
Subjt:  SEFRREVSA

A0A6J1CDQ4 uncharacterized protein LOC1110105332.0e-0535.51Show/hide
Query:  YKVNVDASFCEDLFRAGTR-IVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVF-LLLQDVAMVDLSELGVLVSEFR
        +K+  DASF    F AG   I++RD  GQV+  A    +HV S+D  E L  V+G+R+ +E G+  I+LE DS+R++ L  +D     LS+ G ++   +
Subjt:  YKVNVDASFCEDLFRAGTR-IVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVF-LLLQDVAMVDLSELGVLVSEFR

Query:  REVSAHL
          ++  L
Subjt:  REVSAHL

A0A6J1CIF1 uncharacterized protein LOC1110112374.8e-0739.36Show/hide
Query:  YKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        YK+N DASF      AG  I++R++ GQVM  A    +++ S+D+ E +  V+G++L  ++G+  +ILE DS R+F L    +  DLSE G +V
Subjt:  YKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

A0A6J1DBJ7 uncharacterized protein LOC1110189734.4e-0838.18Show/hide
Query:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV
        P      KVNVDA+F ++ F AG  +++RD  G V L A         +D  EG  + +G+ L VE G +   +E DS+R+F LL     VD SE+GVL 
Subjt:  PDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLV

Query:  SEFRREVSAH
        S  +  +S+H
Subjt:  SEFRREVSAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCCGACGGAGGGAGTTGGTATAAGGTGAATGTAGATGCTTCATTTTGTGAGGATTTGTTTCGGGCGGGCACTAGAATTGTTGTTCGGGATGAGGTGGGGCAAGT
CATGTTGTTGGCTGCTGTTAGTCATGATCATGTGGGGAGTTTGGATTTGGAAGAGGGACTGACGATGGTGGACGGAATGAGACTTGTGGTGGAGATGGGTTTAGTTTCGA
TAATCCTTGAGATCGATTCTATGCGGGTATTTCTGCTACTGCAAGATGTTGCGATGGTGGATTTATCTGAGCTCGGTGTGCTGGTTTCTGAGTTTCGAAGGGAGGTGTCG
GCACATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCCGACGGAGGGAGTTGGTATAAGGTGAATGTAGATGCTTCATTTTGTGAGGATTTGTTTCGGGCGGGCACTAGAATTGTTGTTCGGGATGAGGTGGGGCAAGT
CATGTTGTTGGCTGCTGTTAGTCATGATCATGTGGGGAGTTTGGATTTGGAAGAGGGACTGACGATGGTGGACGGAATGAGACTTGTGGTGGAGATGGGTTTAGTTTCGA
TAATCCTTGAGATCGATTCTATGCGGGTATTTCTGCTACTGCAAGATGTTGCGATGGTGGATTTATCTGAGCTCGGTGTGCTGGTTTCTGAGTTTCGAAGGGAGGTGTCG
GCACATCTTTAG
Protein sequenceShow/hide protein sequence
MVPDGGSWYKVNVDASFCEDLFRAGTRIVVRDEVGQVMLLAAVSHDHVGSLDLEEGLTMVDGMRLVVEMGLVSIILEIDSMRVFLLLQDVAMVDLSELGVLVSEFRREVS
AHL