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Lag0025102 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025102
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:8581568..8582193
RNA-Seq ExpressionLag0025102
SyntenyLag0025102
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN70053.1 transposable element gene [Prunus dulcis]5.7e-2243.07Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVSN------QRWKHMCFSVGGKEVLIKAVLQTI
        I RG P +SHLFFADD  +F KA      ++ +    Y   +GQ+IN  K C     ++  +  S L S       Q W+    S+ GKEVL+K V Q+I
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVSN------QRWKHMCFSVGGKEVLIKAVLQTI

Query:  PTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCI
        P Y MSCF LP+GL  E   MMARFWWG ++G  R I
Subjt:  PTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCI

XP_010687489.1 PREDICTED: uncharacterized protein LOC104901596 [Beta vulgaris subsp. vulgaris]2.2e-2134.01Show/hide
Query:  SSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVS-----------------------------
        + I RG P ISHLFFADD +LF KA ++E  +V + +  Y   +GQ++N  K       ++++   S +V+                             
Subjt:  SSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVS-----------------------------

Query:  ---------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK
                  Q WK    S  GKEVLIKAV+Q IPTY MS F LP GLV E +S++ARFWWG +EG  +   +   +      M G  F  L+C  +
Subjt:  ---------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK

XP_027063067.1 uncharacterized protein LOC113689495 [Coffea arabica]5.7e-2234.36Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINY----------------GKFCWWEDGSLETNQGSNL-----------------
        I+R  P ++HLFFADD L+F KA+  EA  ++  L+ Y   +GQ IN+                G  C    G +E  QG  L                 
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINY----------------GKFCWWEDGSLETNQGSNL-----------------

Query:  -----VSNQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK
                Q WK+   S+ GKEV++KAV   +PTY MSCFKLP+ L KE ++MM+ FWWG  EGR           V    + G  F+ L    K
Subjt:  -----VSNQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK

XP_027103245.1 uncharacterized protein LOC113724555 [Coffea arabica]1.7e-2134.72Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWW----------------EDGSLETNQGSNL----------------V
        I++  P +SHLFFADD LL  KA  +EA  +   ++ Y   TGQ +N+ K   +                 D   E   G  L                +
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWW----------------EDGSLETNQGSNL----------------V

Query:  SN------QRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCL
         N      Q WKH   S GGKE+LIK+V+ T+P Y MSCFKLPK + KE ++ +ARFWWG+ +   +CIG  G S+       G  F  L  +
Subjt:  SN------QRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCL

XP_030939839.1 uncharacterized protein LOC115964720 [Quercus lobata]1.3e-2134.22Show/hide
Query:  EADWSSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGK-FCWWEDGSLETNQG-----SNLVSNQR----------------
        E +  SI+RGCPP+SHLF A+D LLF +A+ ++   ++  L  Y   +GQ+IN  K   ++   + +  +G       L+ + R                
Subjt:  EADWSSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGK-FCWWEDGSLETNQG-----SNLVSNQR----------------

Query:  ----------------WKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNI
                        WK    S+GGKE+LIKAV Q +PTYTMSCF LPKGL  +  SM   FWWG  +   + +G LG    S  +
Subjt:  ----------------WKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNI

TrEMBL top hitse value%identityAlignment
A0A2N9H0Q4 Uncharacterized protein1.8e-2136.08Show/hide
Query:  RGGEEADWSSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWED---------------GSLETNQGSNLVS------
        +G  +A   +  RG P ISHLFFADD ++F  A + E   +L  L TY   +GQ+IN GK   +                 G+  T Q    +       
Subjt:  RGGEEADWSSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWED---------------GSLETNQGSNLVS------

Query:  -----------------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEG
                          Q WK    S  G+EVLIKAV+Q IPTY MSCFK PKGL  E +SM  RFWWG + G  R +  LG +++ +   EG
Subjt:  -----------------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEG

A0A5H2XQ94 Transposable element protein2.8e-2243.07Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVSN------QRWKHMCFSVGGKEVLIKAVLQTI
        I RG P +SHLFFADD  +F KA      ++ +    Y   +GQ+IN  K C     ++  +  S L S       Q W+    S+ GKEVL+K V Q+I
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVSN------QRWKHMCFSVGGKEVLIKAVLQTI

Query:  PTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCI
        P Y MSCF LP+GL  E   MMARFWWG ++G  R I
Subjt:  PTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCI

A0A6P6SC38 uncharacterized protein LOC1136894952.8e-2234.36Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINY----------------GKFCWWEDGSLETNQGSNL-----------------
        I+R  P ++HLFFADD L+F KA+  EA  ++  L+ Y   +GQ IN+                G  C    G +E  QG  L                 
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINY----------------GKFCWWEDGSLETNQGSNL-----------------

Query:  -----VSNQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK
                Q WK+   S+ GKEV++KAV   +PTY MSCFKLP+ L KE ++MM+ FWWG  EGR           V    + G  F+ L    K
Subjt:  -----VSNQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK

A0A6P6VLB2 uncharacterized protein LOC1137245558.1e-2234.72Show/hide
Query:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWW----------------EDGSLETNQGSNL----------------V
        I++  P +SHLFFADD LL  KA  +EA  +   ++ Y   TGQ +N+ K   +                 D   E   G  L                +
Subjt:  IARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWW----------------EDGSLETNQGSNL----------------V

Query:  SN------QRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCL
         N      Q WKH   S GGKE+LIK+V+ T+P Y MSCFKLPK + KE ++ +ARFWWG+ +   +CIG  G S+       G  F  L  +
Subjt:  SN------QRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCL

F4NCI7 Reverse transcriptase domain-containing protein1.8e-2132.99Show/hide
Query:  SSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVS-----------------------------
        + I RG P +SHLFFADD +LF KA ++E  MV + +  Y   +GQ++N  K       S++  + S +V+                             
Subjt:  SSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVS-----------------------------

Query:  ---------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK
                  Q WK    S  GKEVLIK+V Q IPTY MS F LP GL+ E +S++ARFWWG  +   +   H   +      M G  F  L+C  +
Subjt:  ---------NQRWKHMCFSVGGKEVLIKAVLQTIPTYTMSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0457.14Show/hide
Query:  IPTYTMSCFKLPKGLVKECNSMMARFWW
        +PTYTM+CF LPK + K+  S++A FWW
Subjt:  IPTYTMSCFKLPKGLVKECNSMMARFWW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGAGGAGGAGAGGAAGCTGACTGGAGTTCGATAGCTCGTGGATGTCCCCCTATATCGCACTTGTTCTTTGCTGATGACTGCCTCTTGTTCTTTAAGGCAGATAT
GAGAGAAGCTAGGATGGTGTTGAACACGTTGAGGACTTACTCTGTTCTTACTGGGCAGGAGATTAATTATGGTAAGTTTTGTTGGTGGGAGGATGGAAGCCTTGAAACAA
ACCAAGGATCGAATTTGGTCTCAAATCAGAGGTGGAAACACATGTGCTTTTCTGTAGGAGGGAAGGAGGTTCTGATAAAGGCAGTTCTGCAGACCATTCCTACTTACACT
ATGTCATGCTTTAAGCTCCCGAAGGGGTTGGTTAAGGAGTGTAATAGTATGATGGCTAGATTTTGGTGGGGAATTGAGGAGGGGAGAGGAAGGTGCATTGGGCATCTTGG
AGGAAGTTATGTGTCTCAAAATATCATGGAGGGTTGGGATTTCGAGACCTTGAATTGTTTAACAAAGCATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGAGGAGGAGAGGAAGCTGACTGGAGTTCGATAGCTCGTGGATGTCCCCCTATATCGCACTTGTTCTTTGCTGATGACTGCCTCTTGTTCTTTAAGGCAGATAT
GAGAGAAGCTAGGATGGTGTTGAACACGTTGAGGACTTACTCTGTTCTTACTGGGCAGGAGATTAATTATGGTAAGTTTTGTTGGTGGGAGGATGGAAGCCTTGAAACAA
ACCAAGGATCGAATTTGGTCTCAAATCAGAGGTGGAAACACATGTGCTTTTCTGTAGGAGGGAAGGAGGTTCTGATAAAGGCAGTTCTGCAGACCATTCCTACTTACACT
ATGTCATGCTTTAAGCTCCCGAAGGGGTTGGTTAAGGAGTGTAATAGTATGATGGCTAGATTTTGGTGGGGAATTGAGGAGGGGAGAGGAAGGTGCATTGGGCATCTTGG
AGGAAGTTATGTGTCTCAAAATATCATGGAGGGTTGGGATTTCGAGACCTTGAATTGTTTAACAAAGCATTATTAG
Protein sequenceShow/hide protein sequence
MVRGGEEADWSSIARGCPPISHLFFADDCLLFFKADMREARMVLNTLRTYSVLTGQEINYGKFCWWEDGSLETNQGSNLVSNQRWKHMCFSVGGKEVLIKAVLQTIPTYT
MSCFKLPKGLVKECNSMMARFWWGIEEGRGRCIGHLGGSYVSQNIMEGWDFETLNCLTKHY