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Lag0025121 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025121
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr10:8765207..8770224
RNA-Seq ExpressionLag0025121
SyntenyLag0025121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023916366.1 uncharacterized protein LOC112027956 [Quercus suber]8.1e-1635.26Show/hide
Query:  KARRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDH
        K R+ L +  A+         +  + R K   D+  ++  + RNQ     +YTPL    EQVL  I+D   LK PE   K R DP++RN++K C FH DH
Subjt:  KARRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDH

Query:  GHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQAT
        GH T EC  L+ +IE LIR+G  K F+G D     L     +    PL EI+ I+GGSS  G ++  ++   +E   + L     +A++T
Subjt:  GHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQAT

XP_030924801.1 uncharacterized protein LOC115951796 [Quercus lobata]4.0e-1537.65Show/hide
Query:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREG
        KK     + E D R            R   YTPL     QV   I+D   LK PE   K + DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G
Subjt:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREG

Query:  YPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
          K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y  A+ N+
Subjt:  YPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]2.1e-1638.06Show/hide
Query:  KSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVG
        K   D+R            R  +YTPL    EQVL  I+D   LK PE   K + DP++RN+NK C FH DHGH T EC  L+ +IE LIR+G  +GF+G
Subjt:  KSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVG

Query:  NDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
         D                PL EI+ I+GGSS       G    S++ Y   + N+
Subjt:  NDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030958759.1 uncharacterized protein LOC115980670 [Quercus lobata]4.0e-1541.73Show/hide
Query:  DQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDIS
        +++ R +R       R   + PL   F QVL  I+D   LK PE   K + DP+ RNKNK C FH DHGH   EC  L+ +IE LIR+G  + FVG D  
Subjt:  DQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDIS

Query:  KRLLLADQGKGGANPLFEIQTILGGSS
           L     K    PL EI+ I+GG+S
Subjt:  KRLLLADQGKGGANPLFEIQTILGGSS

XP_030970555.1 uncharacterized protein LOC115990928 [Quercus lobata]2.3e-1537.65Show/hide
Query:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREG
        KK     K E D R            R   YTPL    +QVL  I+D   LK PE   K +  P++RNKNK C FH DHGH T EC  L+ +IE LIR+G
Subjt:  KKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREG

Query:  YPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
          + FVG D     L     +    PL EI+ I+GG+S       G+   S++ Y   + N+
Subjt:  YPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

TrEMBL top hitse value%identityAlignment
A0A2N9ERC7 Reverse transcriptase5.3e-1333.73Show/hide
Query:  RKKSEARAKSEADQR-PRSHRAVRNQK-----ARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEI
        RK +E R      Q+ P+    +  ++     A+F  +TPL    +++L  IQD   L+ P    K RSDP+ R KN  C FH DHGH T EC+ L++++
Subjt:  RKKSEARAKSEADQR-PRSHRAVRNQK-----ARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEI

Query:  EALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
        EALIR+G  + +V      +            P+ EI+TI+GG      A+ G  + SR+ Y   + NI
Subjt:  EALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

A0A2N9HH57 Ribonuclease H6.9e-1335.06Show/hide
Query:  RPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKR
        +PR+ +       +F  +TPL    +++L  IQD   L+ P    K RSDP+ R KN  C FH DHGH T EC+ L+++IE LIR+G  + +V    + R
Subjt:  RPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKR

Query:  LLLADQGKGGA-----NPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI
               +  A      P+ EI+TI+GG      A+ G  + SR+ Y   + NI
Subjt:  LLLADQGKGGA-----NPLFEIQTILGGSSEEGGAAHGEQKMSRECYFMALGNI

A0A5C7IR28 Retrotrans_gag domain-containing protein6.9e-1335.37Show/hide
Query:  DQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDIS
        +  P + R  R   +++  Y  L  + EQ+LAA+ +T LL +PE     R DP RRN+ K C FHGD GH T EC  L+D IE LIR GY K F+     
Subjt:  DQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDIS

Query:  KRLLLADQGK------GGANPLFEIQTILGGSSEEGGAAHGEQKMSR
         R  + D  +           +  + TI GG +  G +    +  SR
Subjt:  KRLLLADQGK------GGANPLFEIQTILGGSSEEGGAAHGEQKMSR

A0A6J1DWY0 uncharacterized protein LOC1110252936.9e-1333.52Show/hide
Query:  PRPMAEAEQKSNRKKKARRSL-PQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSD
        P   +EA  ++ R   A      ++   G  T     +  +    S  ++R RS +  ++   +F++YTP T   EQVL  I+D  LLK PE  + S + 
Subjt:  PRPMAEAEQKSNRKKKARRSL-PQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSD

Query:  PDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSE
          +R+K + C+FH DHGHAT++C  L++E+E LIR GY K +V     +       G+   +P  EI+TI+GG  E
Subjt:  PDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSE

A0A6J1DZ52 uncharacterized protein LOC1110256121.4e-1334.64Show/hide
Query:  PRPMAEAEQKSNRKKKARRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSR
        P   AEA  ++ +   A      K       G  A +K E   +     +      V  QK    +F++YTP T   EQVL  I+D  LLK PE     +
Subjt:  PRPMAEAEQKSNRKKKARRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRAVRNQK---ARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSR

Query:  SDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEE
        + P++R+K + C+FH DHGHAT +C  L++E+E LIR+GY K +V +D+       ++     +P  EI+TI+GGS+E+
Subjt:  SDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTGCTAGAACCAACGAGGGTTCTGGAAGGGCAAATTTTCGGATTCGCCTAGAAGGACCAGGAAAGGGACCCAGAGGGAGACCATACCGACGGGCCGGGCCAAC
GTGGCCCGACCCGTACGGTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCTTCCGCTCGGCCCCTACCGCTTCCAGTTGCCTCGGTCCAGCCTGCTTCGCCCAGAACGCC
TCCAAACCCTAGGAGTCCGAGCAGGTATTTATACCCCTCTTCGCCATCGAAGAAGGGGACCGGAAAACTCTATTCTCAACTTCTTTCTCTACTCTCTAGCTGCACAGTTT
CCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCTCAGCTTCTACAAATTCATTGTTGGTG
TCACGTGAAGGGCAGGTGGGTTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGGTCTGCA
GGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGCGCCGAGCCAGACTGGGTTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGAC
TGTTGTAAGGATCCGTGTGCCCACGATGCTACGGACCTAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGA
CAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAAAAAAAGCTCGCAGAA
GTTTGCCGCAAAAGACAGCGTCAGGTACATACACAGGAAATAATGCTAGGAAAAAGTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCT
GTGCGGAACCAAAAAGCCAGATTCGACAGGTATACACCACTAACAGATTCGTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAATTC
GAGAAAGTCGAGATCAGACCCCGATAGGAGGAACAAAAACAAATGCTGCATGTTCCACGGAGACCACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAG
AAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACATAAGCAAGAGGCTACTGCTGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTTGAGATA
CAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCA
AGCAACGTCGGTCTTGGGAGATAGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAATGAAATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTGCTAGAACCAACGAGGGTTCTGGAAGGGCAAATTTTCGGATTCGCCTAGAAGGACCAGGAAAGGGACCCAGAGGGAGACCATACCGACGGGCCGGGCCAAC
GTGGCCCGACCCGTACGGTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCTTCCGCTCGGCCCCTACCGCTTCCAGTTGCCTCGGTCCAGCCTGCTTCGCCCAGAACGCC
TCCAAACCCTAGGAGTCCGAGCAGGTATTTATACCCCTCTTCGCCATCGAAGAAGGGGACCGGAAAACTCTATTCTCAACTTCTTTCTCTACTCTCTAGCTGCACAGTTT
CCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCTCAGCTTCTACAAATTCATTGTTGGTG
TCACGTGAAGGGCAGGTGGGTTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATCGGTGGTGGTCTGCA
GGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGCGCCGAGCCAGACTGGGTTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGAC
TGTTGTAAGGATCCGTGTGCCCACGATGCTACGGACCTAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGA
CAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAAAAAAAGCTCGCAGAA
GTTTGCCGCAAAAGACAGCGTCAGGTACATACACAGGAAATAATGCTAGGAAAAAGTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCT
GTGCGGAACCAAAAAGCCAGATTCGACAGGTATACACCACTAACAGATTCGTTTGAACAGGTCTTGGCCGCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAATTC
GAGAAAGTCGAGATCAGACCCCGATAGGAGGAACAAAAACAAATGCTGCATGTTCCACGGAGACCACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAG
AAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACATAAGCAAGAGGCTACTGCTGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTTGAGATA
CAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGAGGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCA
AGCAACGTCGGTCTTGGGAGATAGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAATGAAATGTTGA
Protein sequenceShow/hide protein sequence
MEIARTNEGSGRANFRIRLEGPGKGPRGRPYRRAGPTWPDPYGRPVCAGRVRLLPLGPYRFQLPRSSLLRPERLQTLGVRAGIYTPLRHRRRGPENSILNFFLYSLAAQF
PDLGIGGGVAYTTPVSSDSCWSCRSRLPQLLQIHCWCHVKGRWVAWPNFGINSWRRLWGRMLASSDRTSVVVCRMDRVQKPEGSLGYEQKAPSQTGFDLGMEKADPNFGD
CCKDPCAHDATDLTQEDNQQKERENREAAISDQHQEDKGKGCRVEDVGQIRHEHPRPMAEAEQKSNRKKKARRSLPQKTASGTYTGNNARKKSEARAKSEADQRPRSHRA
VRNQKARFDRYTPLTDSFEQVLAAIQDTNLLKRPENSRKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEI
QTILGGSSEEGGAAHGEQKMSRECYFMALGNIDRKAQATSVLGDSRGRAFEGSSYPLPMKC