; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025136 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025136
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSmall nuclear ribonucleoprotein family protein
Genome locationchr10:8946887..8947225
RNA-Seq ExpressionLag0025136
SyntenyLag0025136
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]3.3e-5091.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNVESNP+SLD IGKVRKLLF RMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022140017.1 uncharacterized protein LOC111010777 [Momordica charantia]2.1e-4992.86Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNVESNP SLD I KVRKLLF RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]3.8e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NVESNPDSLDR+GKVRKLLF RMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]3.3e-5090.18Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNVESNPDSLDR+GKVRKLLF RML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]1.0e-5192.86Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQVGSNVESNPDSLDR+GKVRKLLF RMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein1.6e-5091.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSNVESNP+SLD IGKVRKLLF RMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 21.1e-4890.18Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQ GSN ESN +SLD IGKVRKLLF RMLIGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1CFL8 uncharacterized protein LOC1110107771.0e-4992.86Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQES GP VQVGSNVESNP SLD I KVRKLLF RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STI EQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341491.9e-5191.96Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQESGG +VQVG NVESNPDSLDR+GKVRKLLF RMLIGIKDGRFFLG+F+C+DKQGNIILQDAVEYRSTRRSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956141.6e-5090.18Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        M+QESGG +VQVGSNVESNPDSLDR+GKVRKLLF RML+GIKDGRFFLG+F+C+DKQGNIILQDAVEYRST RSSPSPMEQ CLGLILIPNSCRVSCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
P63162 Small nuclear ribonucleoprotein-associated protein N5.7e-0537.04Show/hide
Query:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+  LGL+L+     VS  V+
Subjt:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD

P63163 Small nuclear ribonucleoprotein-associated protein N5.7e-0537.04Show/hide
Query:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+  LGL+L+     VS  V+
Subjt:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N5.7e-0537.04Show/hide
Query:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+  LGL+L+     VS  V+
Subjt:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B2.5e-0531.82Show/hide
Query:  LDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-LCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+   LG+ILI     VS  V++   E+  L
Subjt:  LDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-LCLGLILIPNSCRVSCHVDSTIDEQLAL

Q60HD3 Small nuclear ribonucleoprotein-associated protein N5.7e-0537.04Show/hide
Query:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD
        +GK  K+L     RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+  LGL+L+     VS  V+
Subjt:  IGKVRKLLFS---RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQLCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein9.8e-3766.07Show/hide
Query:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD
        MEQ +      V S  E +    D I ++RKLLF +ML+GIKDGRFFLG FHCIDKQGNIILQD VEYRS RRSSPSP EQ CLG+ILIP+SCR SCHVD
Subjt:  MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGACCCGTGGTTCAGGTTGGAAGCAATGTTGAGTCTAACCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTGTTCAGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCACCTTTCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCGCCTTCTCCGATGGAACAACTGTGCCTTGGTCTTATTCTTATCCCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGACGAACAATTGGCGCTGCTA
TCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAAGAATCAGGAGGACCCGTGGTTCAGGTTGGAAGCAATGTTGAGTCTAACCCAGACAGTTTAGATCGCATAGGAAAGGTGAGAAAGCTGCTGTTCAGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCACCTTTCACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTA
GCTCGCCTTCTCCGATGGAACAACTGTGCCTTGGTCTTATTCTTATCCCCAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGACGAACAATTGGCGCTGCTA
TCAGTCTAG
Protein sequenceShow/hide protein sequence
MEQESGGPVVQVGSNVESNPDSLDRIGKVRKLLFSRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQLCLGLILIPNSCRVSCHVDSTIDEQLALL
SV