; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025146 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025146
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:9067924..9068815
RNA-Seq ExpressionLag0025146
SyntenyLag0025146
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038679.1 hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa]6.4e-0943.75Show/hide
Query:  SETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFG
        SE+  + + W  P  G W+FN DASWND  +I    WVVRDS G+ I A    ++ +WP+ VLEA A   GL      FG
Subjt:  SETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFG

XP_015388431.1 uncharacterized protein LOC107178124 [Citrus sinensis]3.4e-1030.26Show/hide
Query:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVE--
        TH+  S H   +T    +SWTPP  GC+K N DA+ N D +I  LG V+R++ G+++ A +N SK    ++ +EA AM  GL         +L +E +  
Subjt:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVE--

Query:  -------------FDCLYLICCL-----NRGVISFKHCPRNQNGVAHSIARL
                      +  +++  +     N   I  +H PR+ N +AHS+ +L
Subjt:  -------------FDCLYLICCL-----NRGVISFKHCPRNQNGVAHSIARL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-0830.6Show/hide
Query:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFDCLYLICCLNR---------
        W PP    WK N++A+W  D   G +GW++RD  G +I A     + E  I+ LE  A+ EGL  +  +      I +E D L  I  L+R         
Subjt:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFDCLYLICCLNR---------

Query:  -------------GVISFKHCPRNQNGVAHSIAR
                      ++S +H  R  N VAH +AR
Subjt:  -------------GVISFKHCPRNQNGVAHSIAR

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.0e-1233.33Show/hide
Query:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFD
        T+L G+ +   +  P    WTPP    WK N DA+W D L  G LGW+VRDS G  I A+               KA+ + L+   G     +KIE+E D
Subjt:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFD

Query:  CLYLICCLNRG----------------------VISFKHCPRNQNGVAHSIARLGSCNFVSN
        CL ++  +N+                       +  FKH P   NGVAH IAR  +C FV +
Subjt:  CLYLICCLNRG----------------------VISFKHCPRNQNGVAHSIARLGSCNFVSN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.2e-0930.71Show/hide
Query:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLK------IEVEFDCLYLICCLNR---
        W PP    WK N+DA+W  D   G +GW++RD  G +I AD    + E  I+ LE  A+ EGL  +  +    ++      I +E D L  I  L+R   
Subjt:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLK------IEVEFDCLYLICCLNR---

Query:  -------------------GVISFKHCPRNQNGVAHSIAR
                            ++S +H  R  N VAH +AR
Subjt:  -------------------GVISFKHCPRNQNGVAHSIAR

TrEMBL top hitse value%identityAlignment
A0A5D3E6P6 RNase H domain-containing protein3.1e-0943.75Show/hide
Query:  SETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFG
        SE+  + + W  P  G W+FN DASWND  +I    WVVRDS G+ I A    ++ +WP+ VLEA A   GL      FG
Subjt:  SETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFG

A0A6J1CP26 uncharacterized protein LOC1110134129.0e-0930.6Show/hide
Query:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFDCLYLICCLNR---------
        W PP    WK N++A+W  D   G +GW++RD  G +I A     + E  I+ LE  A+ EGL  +  +      I +E D L  I  L+R         
Subjt:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFDCLYLICCLNR---------

Query:  -------------GVISFKHCPRNQNGVAHSIAR
                      ++S +H  R  N VAH +AR
Subjt:  -------------GVISFKHCPRNQNGVAHSIAR

A0A6J1D4B6 uncharacterized protein LOC1110171813.9e-1233.33Show/hide
Query:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFD
        T+L G+ +   +  P    WTPP    WK N DA+W D L  G LGW+VRDS G  I A+               KA+ + L+   G     +KIE+E D
Subjt:  THLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEFD

Query:  CLYLICCLNRG----------------------VISFKHCPRNQNGVAHSIARLGSCNFVSN
        CL ++  +N+                       +  FKH P   NGVAH IAR  +C FV +
Subjt:  CLYLICCLNRG----------------------VISFKHCPRNQNGVAHSIARLGSCNFVSN

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-0930.71Show/hide
Query:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLK------IEVEFDCLYLICCLNR---
        W PP    WK N+DA+W  D   G +GW++RD  G +I AD    + E  I+ LE  A+ EGL  +  +    ++      I +E D L  I  L+R   
Subjt:  WTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLK------IEVEFDCLYLICCLNR---

Query:  -------------------GVISFKHCPRNQNGVAHSIAR
                            ++S +H  R  N VAH +AR
Subjt:  -------------------GVISFKHCPRNQNGVAHSIAR

A0A6J5WPU6 Reverse transcriptase domain-containing protein7.6e-0831.9Show/hide
Query:  SWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICA----DLNTSKGEWPISVLEAKAMWE-----------------GLSCLYGKFGDNLKIE-
        SW  P PG  K N DA+W+     G +GWV+RDS G L+CA    DL+ S       +    A+ E                 G+  L G+   +  +E 
Subjt:  SWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICA----DLNTSKGEWPISVLEAKAMWE-----------------GLSCLYGKFGDNLKIE-

Query:  VEFDCLYLICCLNRGVISFKHCPRNQNGVAHSIARLGSCNFVSNFVANDQETSSSWEGLGLFW
        + FD   L+  L+R  +SF   PR+ N  AHS+A      FVS      Q  +  W+ LG +W
Subjt:  VEFDCLYLICCLNRGVISFKHCPRNQNGVAHSIARLGSCNFVSNFVANDQETSSSWEGLGLFW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGAAGGAAAATCAAGAAAGATCAGTGACTCACTTGGAAGGTTCTCGCCACCAATTTTCGGAGACTCACCCGAATCACGAGAGTTGGACTCCTCCTCGCCCTGG
TTGTTGGAAATTTAATTCAGATGCCTCCTGGAATGATGATTTGAAGATTGGGGACCTTGGGTGGGTGGTGCGTGATTCCGGCGGTTCTTTGATCTGTGCAGACCTGAATA
CTTCAAAGGGAGAGTGGCCAATTAGTGTTCTTGAGGCCAAAGCGATGTGGGAAGGCCTCTCTTGCTTATATGGAAAGTTTGGAGATAACCTGAAGATAGAAGTTGAATTC
GATTGCTTGTATCTCATCTGTTGCTTGAATAGAGGAGTGATTTCCTTCAAGCACTGCCCTAGAAATCAGAATGGGGTGGCTCACTCCATTGCCCGTTTGGGTTCTTGTAA
TTTTGTTTCAAATTTTGTTGCTAATGATCAGGAGACTTCTTCCTCGTGGGAAGGTCTGGGTCTTTTTTGGTCTTCTGATCCTCCTCTCTGGCTATCTTCCTTTATTAATA
AGGAGGTAGTTGTTGGTGTATCTGATCTTTTCCCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATGAAGGAAAATCAAGAAAGATCAGTGACTCACTTGGAAGGTTCTCGCCACCAATTTTCGGAGACTCACCCGAATCACGAGAGTTGGACTCCTCCTCGCCCTGG
TTGTTGGAAATTTAATTCAGATGCCTCCTGGAATGATGATTTGAAGATTGGGGACCTTGGGTGGGTGGTGCGTGATTCCGGCGGTTCTTTGATCTGTGCAGACCTGAATA
CTTCAAAGGGAGAGTGGCCAATTAGTGTTCTTGAGGCCAAAGCGATGTGGGAAGGCCTCTCTTGCTTATATGGAAAGTTTGGAGATAACCTGAAGATAGAAGTTGAATTC
GATTGCTTGTATCTCATCTGTTGCTTGAATAGAGGAGTGATTTCCTTCAAGCACTGCCCTAGAAATCAGAATGGGGTGGCTCACTCCATTGCCCGTTTGGGTTCTTGTAA
TTTTGTTTCAAATTTTGTTGCTAATGATCAGGAGACTTCTTCCTCGTGGGAAGGTCTGGGTCTTTTTTGGTCTTCTGATCCTCCTCTCTGGCTATCTTCCTTTATTAATA
AGGAGGTAGTTGTTGGTGTATCTGATCTTTTCCCTCTTTAA
Protein sequenceShow/hide protein sequence
MAMKENQERSVTHLEGSRHQFSETHPNHESWTPPRPGCWKFNSDASWNDDLKIGDLGWVVRDSGGSLICADLNTSKGEWPISVLEAKAMWEGLSCLYGKFGDNLKIEVEF
DCLYLICCLNRGVISFKHCPRNQNGVAHSIARLGSCNFVSNFVANDQETSSSWEGLGLFWSSDPPLWLSSFINKEVVVGVSDLFPL