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Lag0025170 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025170
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr10:9364795..9365214
RNA-Seq ExpressionLag0025170
SyntenyLag0025170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH81586.1 RNA-directed DNA polymerase (Reverse transcriptase) [Trifolium medium]1.4e-2143.65Show/hide
Query:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY
        +S L  +AE    + G++I +  P I+HL + DDS LFF+   +E   +K IL IY  ASGQ IN  KS    S N SPE+K  +  ++RV      G+Y
Subjt:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY

Query:  PGLPSQNARNKKEIFNNIKDQVWRTL
         GLPS   RNKK IFN IKD++W+ +
Subjt:  PGLPSQNARNKKEIFNNIKDQVWRTL

PKA49974.1 Putative ribonuclease H protein [Apostasia shenzhenica]2.1e-2242.86Show/hide
Query:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP
        S L H A  R  + G+  ++Y P I HL +ADDSL+F +     C  IK  L +YE+ASGQ INF+KS    SPN S ++K +I + + + +      Y 
Subjt:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP

Query:  GLPSQNARNKKEIFNNIKDQVWRTLQ
        GLPS   +NK+ IFN +K+QVW+ LQ
Subjt:  GLPSQNARNKKEIFNNIKDQVWRTLQ

XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]1.0e-2141.6Show/hide
Query:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP
        S L  +AE R+++ GL+I +  P+I+HLF+ADDSLLF K + +   +I+NI  +Y   SGQ INF KS+   SPNT+ ++++T    + +  T+++  Y 
Subjt:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP

Query:  GLPSQNARNKKEIFNNIKDQVWRTL
        GLP    +NKK +F +IK++VW  L
Subjt:  GLPSQNARNKKEIFNNIKDQVWRTL

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.9e-3155.81Show/hide
Query:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVA-SGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQ
        +S L +  E +  ++ L+IN+ CP I+HLFYADD LLFFK +   CR+IK IL  YE A SGQ IN  KSMF+VS NT  +M   IR  + V  T+SLGQ
Subjt:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVA-SGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQ

Query:  YPGLPSQNARNKKEIFNNIKDQVWRTLQG
        Y GLPSQ  RNK+++FNNIKD+VW+ LQG
Subjt:  YPGLPSQNARNKKEIFNNIKDQVWRTLQG

XP_037495993.1 uncharacterized protein LOC105645525 [Jatropha curcas]1.4e-2146.9Show/hide
Query:  VSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYPGLPSQNARNKKE
        +SG R+ +  P I+HLF+ADDSL+F K + +E +++K+IL +YE  SGQ INF KS    S NT    +  I  +++VP  D+LG Y GLPS   RN++E
Subjt:  VSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYPGLPSQNARNKKE

Query:  IFNNIKDQVWRTL
        +FN IKD++W+ L
Subjt:  IFNNIKDQVWRTL

TrEMBL top hitse value%identityAlignment
A0A2I0A354 Ribonuclease H protein1.0e-2242.86Show/hide
Query:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP
        S L H A  R  + G+  ++Y P I HL +ADDSL+F +     C  IK  L +YE+ASGQ INF+KS    SPN S ++K +I + + + +      Y 
Subjt:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP

Query:  GLPSQNARNKKEIFNNIKDQVWRTLQ
        GLPS   +NK+ IFN +K+QVW+ LQ
Subjt:  GLPSQNARNKKEIFNNIKDQVWRTLQ

A0A2N9F2M3 Uncharacterized protein1.1e-2143.75Show/hide
Query:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY
        +S L  KAE  N + G+ I +  P I+HLF+ADDS++F + TN +C  + N L +YE ASGQ +N  K+    SPNT  + +T+I  +     T    +Y
Subjt:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY

Query:  PGLPSQNARNKKEIFNNIKDQVWRTLQG
         GLP    R+KK  FN IKD+VWR LQG
Subjt:  PGLPSQNARNKKEIFNNIKDQVWRTLQG

A0A392M2U4 RNA-directed DNA polymerase (Reverse transcriptase) (Fragment)6.6e-2243.65Show/hide
Query:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY
        +S L  +AE    + G++I +  P I+HL + DDS LFF+   +E   +K IL IY  ASGQ IN  KS    S N SPE+K  +  ++RV      G+Y
Subjt:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQY

Query:  PGLPSQNARNKKEIFNNIKDQVWRTL
         GLPS   RNKK IFN IKD++W+ +
Subjt:  PGLPSQNARNKKEIFNNIKDQVWRTL

A0A5B7AER2 Reverse transcriptase domain-containing protein1.1e-2144.88Show/hide
Query:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP
        S LP KAE  N++ G+ + +  P I+HLF+ADDSLLF K    +   I  I+ +Y  ASGQ INF KS    SPN   + +  I+ I+ V       +Y 
Subjt:  SGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQYP

Query:  GLPSQNARNKKEIFNNIKDQVWRTLQG
        GLPS   R+K + FN IKD+VWR LQG
Subjt:  GLPSQNARNKKEIFNNIKDQVWRTLQG

A0A6J1DUG8 uncharacterized protein LOC1110241359.1e-3255.81Show/hide
Query:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVA-SGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQ
        +S L +  E +  ++ L+IN+ CP I+HLFYADD LLFFK +   CR+IK IL  YE A SGQ IN  KSMF+VS NT  +M   IR  + V  T+SLGQ
Subjt:  ISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVA-SGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQ

Query:  YPGLPSQNARNKKEIFNNIKDQVWRTLQG
        Y GLPSQ  RNK+++FNNIKD+VW+ LQG
Subjt:  YPGLPSQNARNKKEIFNNIKDQVWRTLQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTGTAAAACTGAAATGAAGGAGCCTGAAATATCGGGTCTTCCTCATAAAGCGGAAGTTAGAAATGAGGTGTCAGGTTTGAGGATTAACAAATATTGTCCCACTAT
TACACATTTATTTTACGCTGATGATAGTCTATTGTTTTTTAAAACTACTAACAAAGAGTGCAGGAACATCAAGAATATTCTAGGCATTTACGAGGTAGCGTCGGGTCAAA
CAATAAATTTTTATAAATCAATGTTTATGGTTAGCCCGAATACTAGCCCCGAGATGAAGACGACTATCAGGGATATAATAAGGGTTCCATTCACAGATAGTCTGGGGCAA
TATCCTGGACTTCCATCTCAGAATGCTCGAAATAAGAAGGAAATCTTCAACAACATCAAAGATCAAGTTTGGCGAACACTTCAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTGTAAAACTGAAATGAAGGAGCCTGAAATATCGGGTCTTCCTCATAAAGCGGAAGTTAGAAATGAGGTGTCAGGTTTGAGGATTAACAAATATTGTCCCACTAT
TACACATTTATTTTACGCTGATGATAGTCTATTGTTTTTTAAAACTACTAACAAAGAGTGCAGGAACATCAAGAATATTCTAGGCATTTACGAGGTAGCGTCGGGTCAAA
CAATAAATTTTTATAAATCAATGTTTATGGTTAGCCCGAATACTAGCCCCGAGATGAAGACGACTATCAGGGATATAATAAGGGTTCCATTCACAGATAGTCTGGGGCAA
TATCCTGGACTTCCATCTCAGAATGCTCGAAATAAGAAGGAAATCTTCAACAACATCAAAGATCAAGTTTGGCGAACACTTCAAGGATGA
Protein sequenceShow/hide protein sequence
MRCKTEMKEPEISGLPHKAEVRNEVSGLRINKYCPTITHLFYADDSLLFFKTTNKECRNIKNILGIYEVASGQTINFYKSMFMVSPNTSPEMKTTIRDIIRVPFTDSLGQ
YPGLPSQNARNKKEIFNNIKDQVWRTLQG