| GenBank top hits | e value | %identity | Alignment |
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| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 9.1e-86 | 81.63 | Show/hide |
Query: SGSAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYL
S +A +W LGHIN NRIERLVKSG+LNQLED+SLPPCESCLEGKMTKR F+ KG RAK PLELVHSDLCGPMNVKARGGYEYF+SFIDD SRY ++YL
Subjt: SGSAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYL
Query: MHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQL
+HHKSE+ EKFKEYK EVEN++GKTIKTLRSD+GGEYMD +FQDYLIE GI SQLSAP+TPQQNGVSERR RTLLDMVRSMMSYAQLPDSFW L
Subjt: MHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQL
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-84 | 85.71 | Show/hide |
Query: LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEK
LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYRAKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEK
Subjt: LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEK
Query: FKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
FKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: FKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 3.5e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| TYK02840.1 gag/pol protein [Cucumis melo var. makuwa] | 3.5e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| TYK04171.1 gag/pol protein [Cucumis melo var. makuwa] | 3.5e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TZD0 Gag/pol protein | 6.4e-85 | 85.71 | Show/hide |
Query: LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEK
LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYRAKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEK
Subjt: LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEK
Query: FKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
FKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: FKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| A0A5A7UYE8 Gag/pol protein | 1.7e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| A0A5D3BUN8 Gag/pol protein | 1.7e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| A0A5D3BWT8 Gag/pol protein | 1.7e-85 | 71.79 | Show/hide |
Query: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
+ K+ G T H + ++ +T FK + S G G + S A LGHIN +RI RLVK+GLLN+L+D SLPPCESCLEGKMTKRPF+ KGYR
Subjt: IPKEILGGLTGHTEARVRNLQTGRFKAVGRSGSRGLAGLGPIWSGSA--GIWLGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYR
Query: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
AKEPLEL+HSDLCGPMNVKARGG+EYF+SFIDD SRY YLYLM HKSEALEKFKEYKTEVEN L K IK LRSD+GGEYMDL+FQDY+IEHGI SQLSAP
Subjt: AKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAP
Query: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
TPQQNGVSERR RTLLDMVRSMMSYAQLP SFW
Subjt: ATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| E2GK51 Gag/pol protein (Fragment) | 4.4e-86 | 81.63 | Show/hide |
Query: SGSAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYL
S +A +W LGHIN NRIERLVKSG+LNQLED+SLPPCESCLEGKMTKR F+ KG RAK PLELVHSDLCGPMNVKARGGYEYF+SFIDD SRY ++YL
Subjt: SGSAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYL
Query: MHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQL
+HHKSE+ EKFKEYK EVEN++GKTIKTLRSD+GGEYMD +FQDYLIE GI SQLSAP+TPQQNGVSERR RTLLDMVRSMMSYAQLPDSFW L
Subjt: MHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.9e-26 | 35.45 | Show/hide |
Query: GHINCNRIERLVK------SGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRA--KEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHH
GHI+ ++ + + LLN LE S CE CL GK + PF + + K PL +VHSD+CGP+ YFV F+D + Y YL+ +
Subjt: GHINCNRIERLVK------SGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRA--KEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHH
Query: KSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
KS+ F+++ + E + L D G EY+ + + + ++ GI+ L+ P TPQ NGVSER RT+ + R+M+S A+L SFW
Subjt: KSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-39 | 40 | Show/hide |
Query: SAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMH
S +W +GH++ ++ L K L++ + ++ PC+ CL GK + F R L+LV+SD+CGPM +++ GG +YFV+FIDD SR ++Y++
Subjt: SAGIW---LGHINCNRIERLVKSGLLNQLEDDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMH
Query: HKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
K + + F+++ VE + G+ +K LRSD GGEY +F++Y HGI + + P TPQ NGV+ER RT+++ VRSM+ A+LP SFW
Subjt: HKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein | 6.9e-20 | 29.08 | Show/hide |
Query: LGHINCNRIERLVKSGLLNQLEDDSLP-------PCESCLEGKMTKRPFSEKGYRAK-----EPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYL
LGH N I++ +K + L++ + C CL GK TK KG R K EP + +H+D+ GP++ + YF+SF D+ +R+ ++
Subjt: LGHINCNRIERLVKSGLLNQLEDDSLP-------PCESCLEGKMTKRPFSEKGYRAK-----EPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYL
Query: YLMHHKSE--ALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
Y +H + E L F ++NQ + ++ D+G EY + + GIT+ + A + +GV+ER RTLL+ R+++ + LP+ W
Subjt: YLMHHKSE--ALEKFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFW
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.6e-24 | 35.37 | Show/hide |
Query: CESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYM
C CL K K PFS+ + PLE ++SD+ + + Y Y+V F+D +RY +LY + KS+ E F +K +EN+ I T SD GGE++
Subjt: CESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALEKFKEYKTEVENQLGKTIKTLRSDQGGEYM
Query: DLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQLRLPYTF
L +Y +HGI+ S P TP+ NG+SER++R +++ +++S+A +P ++W PY F
Subjt: DLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQLRLPYTF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.4e-25 | 34.72 | Show/hide |
Query: LGHINCNRIERLVKSGLLNQLE-DDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALE
LGH + + ++ + L L L C C K K PFS + +PLE ++SD+ + + Y Y+V F+D +RY +LY + KS+ +
Subjt: LGHINCNRIERLVKSGLLNQLE-DDSLPPCESCLEGKMTKRPFSEKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDCSRYDYLYLMHHKSEALE
Query: KFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQLRLPYTF
F +K+ VEN+ I TL SD GGE++ L +DYL +HGI+ S P TP+ NG+SER++R +++M +++S+A +P ++W PY F
Subjt: KFKEYKTEVENQLGKTIKTLRSDQGGEYMDLQFQDYLIEHGITSQLSAPATPQQNGVSERRYRTLLDMVRSMMSYAQLPDSFWDMQLRLPYTF
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