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Lag0025229 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025229
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:10161433..10162319
RNA-Seq ExpressionLag0025229
SyntenyLag0025229
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD35546.1 TPA_asm: hypothetical protein HUJ06_006186 [Nelumbo nucifera]3.9e-1033.33Show/hide
Query:  SNDQSMDDVRRLIVQGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDI-KEE
        SN ++++ V     Q   + ++   A+ + ++TI  G+V RDQ       K   +   S L +EA+ VL GL  AREL   ++ + SD+ SL+  + K+E
Subjt:  SNDQSMDDVRRLIVQGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDI-KEE

Query:  IRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQEGLYSQPQLWVGNYPLW
        I C + I+T + D   V  S   V+F FV R  N+  H  AQ GL   P+ W+   P W
Subjt:  IRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQEGLYSQPQLWVGNYPLW

XP_011470556.1 PREDICTED: uncharacterized protein LOC105353255 [Fragaria vesca subsp. vesca]3.3e-0931.72Show/hide
Query:  DAAYRSDMDTIGIGIVIRDQHGNLKA-VKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGK
        D A+ +D+   G G+VIRD+HG  +A   K+    TSP  AE +A+LEGL+LA  L + ++   +D L L Q + +     S + T + ++K+  +    
Subjt:  DAAYRSDMDTIGIGIVIRDQHGNLKA-VKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGK

Query:  VTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWMESLSLQE
             V R  NR  H  A   L YS+ Q W    P ++  + L +
Subjt:  VTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWMESLSLQE

XP_021721216.1 uncharacterized protein LOC110688762 [Chenopodium quinoa]1.3e-1032.45Show/hide
Query:  LQIMPCFDVLGLRRNIWQNLEKANPVGNSNDQSMDDVRRLI--VQGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLK-AVKKMSSPCTSPLGAEAVAVL
        L I  C+ +   R     + +  NP     +QSM+ V +L+  +Q EE                 +G+++RD  G +K AV      C  P  AEA A+L
Subjt:  LQIMPCFDVLGLRRNIWQNLEKANPVGNSNDQSMDDVRRLI--VQGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLK-AVKKMSSPCTSPLGAEAVAVL

Query:  EGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQ-EGLYSQPQLWVGNYP
         GL+ A E G+  L V SDSLSLI  IK + R  S +   L DI DV   L  V++ F  R  N+  H+ A      +  ++W  N+P
Subjt:  EGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQ-EGLYSQPQLWVGNYP

XP_024164210.1 uncharacterized protein LOC112171231 [Rosa chinensis]8.7e-1032.78Show/hide
Query:  WQNLEKANPVGNSNDQSMDDVRRLIV-----QGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLK---AVKKMSSPCTSPLGAEAVAVLEGLRLARELGV
        WQN E AN +G    +S+ D+    V     Q   + M+ D A+       G+G+V RD  GNLK   AV ++ +   +P   EA+A+L GLR A  +G 
Subjt:  WQNLEKANPVGNSNDQSMDDVRRLIV-----QGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLK---AVKKMSSPCTSPLGAEAVAVLEGLRLARELGV

Query:  HRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWM
         R+ V  D+LS+I  ++E     S     + ++K +  S    +  FV R  N+  H+ A+E L  SQP L + + P W+
Subjt:  HRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWM

XP_042939343.1 uncharacterized protein LOC122274364 [Carya illinoinensis]3.3e-0935.25Show/hide
Query:  DAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSP-CTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGK
        DAA   D   IGIG+V RD  G++ A KK+S P    P+ AEA+       +ARELG++ + +  D+L ++  I         +   L D + V +SL +
Subjt:  DAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSP-CTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGK

Query:  VTFGFVCRRFNRFTHKTAQEGL
            FV R  N+F H  A+E L
Subjt:  VTFGFVCRRFNRFTHKTAQEGL

TrEMBL top hitse value%identityAlignment
A0A1U8PW40 uncharacterized protein LOC1079633262.7e-0929.73Show/hide
Query:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS
        ++ DA +R +  T+   +VIRD++   L A  K++ P  S    E VAV+  LR A+ELG   + V  DS S+I+         S I+   W  K++   
Subjt:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS

Query:  LGKVTFGFVCRRFNRFTHKTAQEGLYS-QPQLWVGNYPLWMESLSLQE
             F F+ +  N+  H   QEGL   +   WV + P  +E+ + ++
Subjt:  LGKVTFGFVCRRFNRFTHKTAQEGLYS-QPQLWVGNYPLWMESLSLQE

A0A2I4HQV1 uncharacterized protein LOC1090205162.1e-0926.67Show/hide
Query:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS
        ++ D A  S+    G+G+++RD  G  + +  K      + +  E +A+L GL+ +  LG+H L + SDSL ++ +   +   ++ I  T+   K++   
Subjt:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS

Query:  LGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYP------LWMESL
               +  R FN   H  A+ GL      LW G++P      LW++SL
Subjt:  LGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYP------LWMESL

A0A2N9I609 Uncharacterized protein2.2e-1132.24Show/hide
Query:  EMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSPCTSPL-GAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDV
        E   + DAA     +T  IG++IRD HG           C   +  AEA+AV E ++LAR++G+ ++ V  DSL + Q ++++  C +     + D+  V
Subjt:  EMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSPCTSPL-GAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDV

Query:  QNSLGKVTFGFVCRRFNRFTHKTAQEG--LYSQPQLWVGNYPLWMESLSLQE
         +SL +V F  VCR  NR  H  A+ G  L S   +W+ + P ++E +   E
Subjt:  QNSLGKVTFGFVCRRFNRFTHKTAQEG--LYSQPQLWVGNYPLWMESLSLQE

A0A6P4Q2L2 uncharacterized protein LOC1084851642.1e-0930.41Show/hide
Query:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS
        ++ DA +R +  T+   +VIRD++   L A  K++ P  S    EAVAV+  LR A+ELG   + V  DS S+I+         S I+   W  K++   
Subjt:  MHTDAAYRSDMDTIGIGIVIRDQHGN-LKAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNS

Query:  LGKVTFGFVCRRFNRFTHKTAQEGLYS-QPQLWVGNYPLWMESLSLQE
             F F+ +  N+  H   QEGL   +   WV + P  +E+ + ++
Subjt:  LGKVTFGFVCRRFNRFTHKTAQEGLYS-QPQLWVGNYPLWMESLSLQE

A0A6P6UIH5 uncharacterized protein LOC1137106612.1e-0932.89Show/hide
Query:  MIMHTDAAYRSDMDTIGIGIVIRDQHGNL---KAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKD
        M ++TDAA  ++    G+G++ RD  GN+   + ++K SS        EA A+ +GL +ARE G  R+ + +D  + I+ I +    E+ I T + DI+ 
Subjt:  MIMHTDAAYRSDMDTIGIGIVIRDQHGNL---KAVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKD

Query:  VQNSLGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWMESLSLQE
        + +     TF FV R  NR  HK AQ         +W  ++PLW++  S+QE
Subjt:  VQNSLGKVTFGFVCRRFNRFTHKTAQEGL-YSQPQLWVGNYPLWMESLSLQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0831.06Show/hide
Query:  EEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSP--CTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIK
        + + + TDAA++ +   +G G VIR+    L A+   S+      PL AEA+A+   L+ A+ +G+ +L++ SDS  LI  I  E          ++DI 
Subjt:  EEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSP--CTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIK

Query:  DVQNSLGKVTFGFVCRRFNRFTHKTAQEGLYS
        ++      V+F FV R  NR   + A+  L S
Subjt:  DVQNSLGKVTFGFVCRRFNRFTHKTAQEGLYS

AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0428.12Show/hide
Query:  HTDAAYRSDMDTIGIGIVIRDQHGNLK-----AVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDV
        +TDA +  D +  GIG V+R++ G +K     A+ K+ S   + L A   AVL   R       + +   SDS  LI+ +  +    S +  T+ D++ +
Subjt:  HTDAAYRSDMDTIGIGIVIRDQHGNLK-----AVKKMSSPCTSPLGAEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDV

Query:  QNSLGKVTFGFVCRRFNRFTHKTAQEGL
         +   +V F F+ R  N    + A+E L
Subjt:  QNSLGKVTFGFVCRRFNRFTHKTAQEGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCACCATGTGCCTGTCAACGGGACTTGCCCAGTGTGCCAGGAGGAGATGGAAGACTACAGATCATGCCCTGTTTTGATGTATTAGGGCTTAGGAGGAATATATG
GCAGAATTTAGAAAAGGCAAATCCAGTGGGCAACTCTAATGATCAATCAATGGATGACGTTCGAAGACTTATTGTACAAGGAGAAGAGATGATTATGCATACAGATGCTG
CTTACAGGAGCGATATGGACACAATTGGAATAGGAATTGTGATTCGTGATCAACATGGCAACCTTAAGGCAGTGAAGAAGATGTCTTCTCCTTGTACCTCTCCATTAGGG
GCAGAAGCGGTAGCGGTGCTTGAAGGGCTACGCCTAGCAAGGGAATTGGGGGTGCATCGTTTAACAGTACCGTCTGATTCGCTGTCCTTAATCCAAGATATTAAGGAGGA
GATCCGTTGTGAGTCTTGCATTGCCACAACTCTGTGGGACATTAAAGATGTTCAAAACTCATTAGGTAAGGTGACTTTTGGTTTTGTTTGTCGTCGTTTTAATAGATTTA
CCCATAAGACGGCACAAGAGGGACTTTATTCACAACCACAGTTGTGGGTAGGGAACTATCCTCTTTGGATGGAAAGTTTATCGCTCCAAGAGCGACATATGTTTGTTTCC
CTTCGGGGCTTTTCTGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCACCATGTGCCTGTCAACGGGACTTGCCCAGTGTGCCAGGAGGAGATGGAAGACTACAGATCATGCCCTGTTTTGATGTATTAGGGCTTAGGAGGAATATATG
GCAGAATTTAGAAAAGGCAAATCCAGTGGGCAACTCTAATGATCAATCAATGGATGACGTTCGAAGACTTATTGTACAAGGAGAAGAGATGATTATGCATACAGATGCTG
CTTACAGGAGCGATATGGACACAATTGGAATAGGAATTGTGATTCGTGATCAACATGGCAACCTTAAGGCAGTGAAGAAGATGTCTTCTCCTTGTACCTCTCCATTAGGG
GCAGAAGCGGTAGCGGTGCTTGAAGGGCTACGCCTAGCAAGGGAATTGGGGGTGCATCGTTTAACAGTACCGTCTGATTCGCTGTCCTTAATCCAAGATATTAAGGAGGA
GATCCGTTGTGAGTCTTGCATTGCCACAACTCTGTGGGACATTAAAGATGTTCAAAACTCATTAGGTAAGGTGACTTTTGGTTTTGTTTGTCGTCGTTTTAATAGATTTA
CCCATAAGACGGCACAAGAGGGACTTTATTCACAACCACAGTTGTGGGTAGGGAACTATCCTCTTTGGATGGAAAGTTTATCGCTCCAAGAGCGACATATGTTTGTTTCC
CTTCGGGGCTTTTCTGTTGCTTAA
Protein sequenceShow/hide protein sequence
MEPPCACQRDLPSVPGGDGRLQIMPCFDVLGLRRNIWQNLEKANPVGNSNDQSMDDVRRLIVQGEEMIMHTDAAYRSDMDTIGIGIVIRDQHGNLKAVKKMSSPCTSPLG
AEAVAVLEGLRLARELGVHRLTVPSDSLSLIQDIKEEIRCESCIATTLWDIKDVQNSLGKVTFGFVCRRFNRFTHKTAQEGLYSQPQLWVGNYPLWMESLSLQERHMFVS
LRGFSVA