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Lag0025244 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025244
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr10:10367882..10368946
RNA-Seq ExpressionLag0025244
SyntenyLag0025244
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC17873.1 40S ribosomal protein S13 [Morus notabilis]4.0e-1561.9Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHG+A   PE    L   ++ VSI+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

KAF1001731.1 hypothetical protein AG4045_000098 [Apium graveolens]2.6e-1444.96Show/hide
Query:  PKGKEPRGVNVRLLEHLQI---------SKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDS
        P   E  G++V  +E++++         +KKGLTPSQIGVILRDSHGIAQ    + G+     L +H              ++ V+I+KHLERNRKDKDS
Subjt:  PKGKEPRGVNVRLLEHLQI---------SKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDS

Query:  KFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        KFRL    +    +    KKTKKLPPVWK
Subjt:  KFRLFWWRAG-SIVCPVLKKTKKLPPVWK

KAF1002335.1 hypothetical protein AG4045_021514 [Apium graveolens]3.1e-1557.3Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSH-----QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHGIAQ    +   +P       ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSH-----QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

KJB22315.1 hypothetical protein B456_004G040700 [Gossypium raimondii]3.4e-1454.55Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSHQ----------EIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHGIAQ    + GS     L +H+          + V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSHQ----------EIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

PPS00109.1 hypothetical protein GOBAR_AA20554 [Gossypium barbadense]1.5e-1457.29Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGT-----------PEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHGIAQ T           PEI   L    ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGT-----------PEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A2P5X9U0 Ribosomal_S13_N domain-containing protein7.4e-1557.29Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGT-----------PEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHGIAQ T           PEI   L    ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGT-----------PEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

A0A5B6ZMG1 Putative 40S ribosomal protein S13-like9.7e-1560.47Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQG-TPEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKG+TPSQIGVILRDSHGI  G  PEI   L    +  V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQG-TPEIRGSL-PSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

A0A6L5B7U0 Ribosomal_S13_N domain-containing protein1.3e-1444.96Show/hide
Query:  PKGKEPRGVNVRLLEHLQI---------SKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDS
        P   E  G++V  +E++++         +KKGLTPSQIGVILRDSHGIAQ    + G+     L +H              ++ V+I+KHLERNRKDKDS
Subjt:  PKGKEPRGVNVRLLEHLQI---------SKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDS

Query:  KFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        KFRL    +    +    KKTKKLPPVWK
Subjt:  KFRLFWWRAG-SIVCPVLKKTKKLPPVWK

A0A6L5BAA8 Ribosomal_S13_N domain-containing protein1.5e-1557.3Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSH-----QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHGIAQ    +   +P       ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSH-----QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

W9RYU7 40S ribosomal protein S132.0e-1561.9Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK
        + +KKGLTPSQIGVILRDSHG+A   PE    L   ++ VSI+KHLERNRKDKDSKFRL    +    +    KKTKKLPPVWK
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSHQEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
O77303 40S ribosomal protein S132.1e-1450.98Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQ-----GTPEIR-----GSLPSHQE--------IVSIKKHLERNRKDKDSKFRLFWWRAGSIVCPVLKKTKK-LPPV
        +++KKGLTPSQIGVILRDSHG+AQ     G   +R     G  P+  E         V+I+KHLERNRKDKDSKFRL    +         KT+K LPPV
Subjt:  QISKKGLTPSQIGVILRDSHGIAQ-----GTPEIR-----GSLPSHQE--------IVSIKKHLERNRKDKDSKFRLFWWRAGSIVCPVLKKTKK-LPPV

Query:  WK
        WK
Subjt:  WK

P46298 40S ribosomal protein S138.5e-1652.43Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGIAQ    + GS     L +H              ++ VSI+KHLER RKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK

P59223 40S ribosomal protein S13-16.5e-1651.46Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGI Q    + GS     L +H              ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK

P59224 40S ribosomal protein S13-26.5e-1651.46Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGI Q    + GS     L +H              ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK

P62302 40S ribosomal protein S131.0e-1653.4Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGIAQ    + GS     L +H              ++ VSI+KHLERNRKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.6e-1751.46Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGI Q    + GS     L +H              ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK

AT4G00100.1 ribosomal protein S13A4.6e-1751.46Show/hide
Query:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP
        + +KKGLTPSQIGVILRDSHGI Q    + GS     L +H              ++ V+I+KHLERNRKDKDSKFRL    +    +    KKTKKLPP
Subjt:  QISKKGLTPSQIGVILRDSHGIAQGTPEIRGS-----LPSH--------------QEIVSIKKHLERNRKDKDSKFRLFWWRAG-SIVCPVLKKTKKLPP

Query:  VWK
        VWK
Subjt:  VWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAATGTAAGGTTGCTAGAACATTTGCAAATTTCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGA
TTCTCACGGGATTGCTCAGGGTACTCCTGAAATCCGAGGATCTTTACCATCTCATCAAGAAATTGTTTCAATCAAAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATT
CCAAGTTCAGGTTATTTTGGTGGAGAGCAGGATCCATTGTCTGCCCGGTATTAAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCCAAAAGGAAAGGAACCAAGGGGTGTCAATGTAAGGTTGCTAGAACATTTGCAAATTTCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGA
TTCTCACGGGATTGCTCAGGGTACTCCTGAAATCCGAGGATCTTTACCATCTCATCAAGAAATTGTTTCAATCAAAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATT
CCAAGTTCAGGTTATTTTGGTGGAGAGCAGGATCCATTGTCTGCCCGGTATTAAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MMPKGKEPRGVNVRLLEHLQISKKGLTPSQIGVILRDSHGIAQGTPEIRGSLPSHQEIVSIKKHLERNRKDKDSKFRLFWWRAGSIVCPVLKKTKKLPPVWK