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Lag0025284 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025284
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontwinkle homolog protein, chloroplastic/mitochondrial
Genome locationchr10:10839728..10841675
RNA-Seq ExpressionLag0025284
SyntenyLag0025284
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domainsIPR006171 - TOPRIM domain
IPR027032 - Twinkle-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8514790.1 hypothetical protein F0562_017969 [Nyssa sinensis]1.1e-3073.12Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI
        PP  S  E  PE  DTKYQYLWNCK+YL KASRII+ATDGDPPGQALAEE+ARR+GRERCWRV+WPKKNE+DHFKDANE+L +    DV+ +I
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI

KAB8388308.1 hypothetical protein FH972_024782 [Carpinus fangiana]2.5e-3074.19Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI
        PP  S  E  PE  D KYQYLWNCK+YL + SRII+ATDGDPPGQALAEE+ARR+GRERCWRVKWPKKNEVDHFKDANE+L  L A DV+ E+
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI

XP_023000969.1 twinkle homolog protein, chloroplastic/mitochondrial [Cucurbita maxima]3.8e-3180.95Show/hide
Query:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL
        PP  S+ +  P  +DTKYQYLWNCKDYLSKASRII+ATDGDPPGQALAEEIARRVGRERCWRVKWPKKNE +HFKDANE+L  L
Subjt:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL

XP_038680032.1 twinkle homolog protein, chloroplastic/mitochondrial [Tripterygium wilfordii]1.5e-3079.76Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL
        PP  S  +  PE  DTKYQYLWNCK+YL KASRII+ATDGDPPGQALAEE+ARR+GRERCWRVKWPKKNEVDHFKDANE+L  L
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL

XP_038894379.1 twinkle homolog protein, chloroplastic/mitochondrial [Benincasa hispida]7.7e-3282.14Show/hide
Query:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL
        PP  S+N+  P  +D KYQYLWNCKDYL+KASRII+ATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANE+L  L
Subjt:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL

TrEMBL top hitse value%identityAlignment
A0A5J4Z8R6 Uncharacterized protein5.4e-3173.12Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI
        PP  S  E  PE  DTKYQYLWNCK+YL KASRII+ATDGDPPGQALAEE+ARR+GRERCWRV+WPKKNE+DHFKDANE+L +    DV+ +I
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI

A0A5N6KZ06 Uncharacterized protein1.2e-3074.19Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI
        PP  S  E  PE  D KYQYLWNCK+YL + SRII+ATDGDPPGQALAEE+ARR+GRERCWRVKWPKKNEVDHFKDANE+L  L A DV+ E+
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEI

A0A6J1CKU2 twinkle homolog protein, chloroplastic/mitochondrial isoform X21.6e-3061.86Show/hide
Query:  LEGYQQYFVTDNESNRV-IQKREEENKKSQSPLHPPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP
        ++G     + + E +++ +++    N  S     PP  S+ +  P  +DTKYQYLWNCK+YLSKASRII+ATDGDPPGQALAEEIARRVGRERCWRVKWP
Subjt:  LEGYQQYFVTDNESNRV-IQKREEENKKSQSPLHPPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP

Query:  KKNEVDHFKDANEILNLL
        KKNEVDHFKDANE+L  L
Subjt:  KKNEVDHFKDANEILNLL

A0A6J1KLG2 twinkle homolog protein, chloroplastic/mitochondrial1.9e-3180.95Show/hide
Query:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL
        PP  S+ +  P  +DTKYQYLWNCKDYLSKASRII+ATDGDPPGQALAEEIARRVGRERCWRVKWPKKNE +HFKDANE+L  L
Subjt:  PPHDSRNEERP--EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL

A0A7J7CHT4 Twinkle protein chloroplastic/mitochondrial7.1e-3179.76Show/hide
Query:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL
        PP  S  +  PE  DTKYQYLWNCK+YL KASRII+ATDGDPPGQALAEE+ARR+GRERCWRVKWPKKNEVDHFKDANE+L  L
Subjt:  PPHDSRNEERPE--DTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLL

SwissProt top hitse value%identityAlignment
B5X582 Twinkle homolog protein, chloroplastic/mitochondrial1.1e-2879.41Show/hide
Query:  EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEIL
        +DTKY++LWNC DYL KASRI+IATDGD PGQA+AEEIARR+G+ERCWRVKWPKK+E +HFKDANE+L
Subjt:  EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEIL

F4I6E6 Primase homolog protein3.3e-2549.57Show/hide
Query:  LEGYQQYFVTDNESNRVIQKREEENKKSQSPLHPPHDSRNEERP---EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP
        +E   +  + + E +++  +          P   P    ++E P   +DT ++Y+WNC DYL KASRI+IATDGD PGQALAEE+ARR+G+ERCW VKWP
Subjt:  LEGYQQYFVTDNESNRVIQKREEENKKSQSPLHPPHDSRNEERP---EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP

Query:  KKNEVDHFKDANEIL
        KK+E +HFKDANE+L
Subjt:  KKNEVDHFKDANEIL

Arabidopsis top hitse value%identityAlignment
AT1G30660.1 nucleic acid binding;nucleic acid binding2.3e-2649.57Show/hide
Query:  LEGYQQYFVTDNESNRVIQKREEENKKSQSPLHPPHDSRNEERP---EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP
        +E   +  + + E +++  +          P   P    ++E P   +DT ++Y+WNC DYL KASRI+IATDGD PGQALAEE+ARR+G+ERCW VKWP
Subjt:  LEGYQQYFVTDNESNRVIQKREEENKKSQSPLHPPHDSRNEERP---EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWP

Query:  KKNEVDHFKDANEIL
        KK+E +HFKDANE+L
Subjt:  KKNEVDHFKDANEIL

AT1G30680.1 toprim domain-containing protein7.7e-3079.41Show/hide
Query:  EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEIL
        +DTKY++LWNC DYL KASRI+IATDGD PGQA+AEEIARR+G+ERCWRVKWPKK+E +HFKDANE+L
Subjt:  EDTKYQYLWNCKDYLSKASRIIIATDGDPPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAACCGAGATCACATCCGAATGAGAGGGATCCTGAGGACATGAGAGGGAATGTCGGGGCCTTAAGTGCCGAATCCGGATTCCGAATCCTAGGCCTGGGGTGTTA
CATGTTCTATGTTCGCGAATCTCCAGTCCAAATCAATAATCTAGGGCAAGCCCATACTGAGTGGATAAACTCAGATAGAAGCCCATCGGCCAGGAAAAACAACCGAAAAG
GAGTCGCTTTTGCCAAAAAGAACCAAGTTACCATCTTTAAAAGGGGTGACATTCAACACGCGAATAAAAACAAAAGCCCCCTGAGAGTAGAAGACACGTTGAACAAATGG
ATGGGGGATACAAGTATGGAGTCGGACCCATCCATGTCAAGCCCAACCAGTAGAGATTTGGAAGATTTAGATGAAGAAAGTCCAAACCTCTATGAAGAGAACGACGATTC
GTTCTTGGAAGGATATCAACAGTATTTTGTAACTGACAATGAATCTAATAGGGTTATTCAGAAGCGGGAGGAAGAAAATAAGAAGTCCCAGTCCCCCCTCCATCCCCCAC
ATGATAGTAGAAATGAAGAAAGACCTGAAGATACGAAGTATCAGTATTTATGGAACTGCAAAGATTACTTGAGTAAGGCATCACGCATTATCATTGCTACTGATGGTGAT
CCTCCTGGTCAAGCTTTAGCAGAGGAGATTGCACGTCGTGTTGGAAGGGAAAGATGTTGGAGGGTCAAATGGCCAAAAAAAAATGAGGTCGACCATTTCAAAGATGCAAA
TGAGATCTTGAACTTGCTTTGGGCAATGGACGTTATTGATGAGATAAGGATCAGGAGTGGAATGTCATCTTTCTGGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAACCGAGATCACATCCGAATGAGAGGGATCCTGAGGACATGAGAGGGAATGTCGGGGCCTTAAGTGCCGAATCCGGATTCCGAATCCTAGGCCTGGGGTGTTA
CATGTTCTATGTTCGCGAATCTCCAGTCCAAATCAATAATCTAGGGCAAGCCCATACTGAGTGGATAAACTCAGATAGAAGCCCATCGGCCAGGAAAAACAACCGAAAAG
GAGTCGCTTTTGCCAAAAAGAACCAAGTTACCATCTTTAAAAGGGGTGACATTCAACACGCGAATAAAAACAAAAGCCCCCTGAGAGTAGAAGACACGTTGAACAAATGG
ATGGGGGATACAAGTATGGAGTCGGACCCATCCATGTCAAGCCCAACCAGTAGAGATTTGGAAGATTTAGATGAAGAAAGTCCAAACCTCTATGAAGAGAACGACGATTC
GTTCTTGGAAGGATATCAACAGTATTTTGTAACTGACAATGAATCTAATAGGGTTATTCAGAAGCGGGAGGAAGAAAATAAGAAGTCCCAGTCCCCCCTCCATCCCCCAC
ATGATAGTAGAAATGAAGAAAGACCTGAAGATACGAAGTATCAGTATTTATGGAACTGCAAAGATTACTTGAGTAAGGCATCACGCATTATCATTGCTACTGATGGTGAT
CCTCCTGGTCAAGCTTTAGCAGAGGAGATTGCACGTCGTGTTGGAAGGGAAAGATGTTGGAGGGTCAAATGGCCAAAAAAAAATGAGGTCGACCATTTCAAAGATGCAAA
TGAGATCTTGAACTTGCTTTGGGCAATGGACGTTATTGATGAGATAAGGATCAGGAGTGGAATGTCATCTTTCTGGTGCTAA
Protein sequenceShow/hide protein sequence
MNQPRSHPNERDPEDMRGNVGALSAESGFRILGLGCYMFYVRESPVQINNLGQAHTEWINSDRSPSARKNNRKGVAFAKKNQVTIFKRGDIQHANKNKSPLRVEDTLNKW
MGDTSMESDPSMSSPTSRDLEDLDEESPNLYEENDDSFLEGYQQYFVTDNESNRVIQKREEENKKSQSPLHPPHDSRNEERPEDTKYQYLWNCKDYLSKASRIIIATDGD
PPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEILNLLWAMDVIDEIRIRSGMSSFWC