; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0025296 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025296
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprimase homolog protein isoform X2
Genome locationchr10:10956404..10959509
RNA-Seq ExpressionLag0025296
SyntenyLag0025296
Gene Ontology termsGO:0032508 - DNA duplex unwinding (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domainsIPR006171 - TOPRIM domain
IPR027032 - Twinkle-like protein
IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047067.1 twinkle-like protein [Cucumis melo var. makuwa]9.0e-8789.33Show/hide
Query:  MISQETLARNVVMQIAGR-QVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVST
        MISQETL RNVVMQ+ GR QVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGT K LYGIDDI+D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVST
Subjt:  MISQETLARNVVMQIAGR-QVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVST

Query:  DTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVAFLL
        DT+P IEKD+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  +RFKDANEV FLL
Subjt:  DTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVAFLL
XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]2.6e-8690.17Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQ+ GRQVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGT K LYGIDDI+D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        T+P IEKD+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  +RFKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]4.3e-8993.64Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQIAGRQVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGTEKLLYGIDDI+D +ELIIVEGEMDKLSVEEAG LNCISVPGGAP+KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        TVPS EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD +RFKDANE+
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
XP_038893951.1 primase homolog protein isoform X2 [Benincasa hispida]4.3e-8993.1Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQIAGRQVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGTEKLLYGIDDI+D +ELIIVEGEMDKLSVEEAG LNCISVPGGAP+KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVA
        TVPS EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD +RFKDANE++
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVA
XP_038893952.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Benincasa hispida]4.3e-8993.64Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQIAGRQVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGTEKLLYGIDDI+D +ELIIVEGEMDKLSVEEAG LNCISVPGGAP+KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        TVPS EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD +RFKDANE+
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
TrEMBL top hitse value%identityAlignment
A0A0A0LYN4 Toprim domain-containing protein1.7e-8690.75Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQ+AGRQV IAFTYRQNGQLVGCKYRT+DKRFWQEKGT K LYGIDDI+D DELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        TVP IEKDTAYQYLWSCKDYLDKVSR+ILATDSD PGQALAEELARRLGK+RCWRV WPYKD  +RFKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
A0A1S3BDI8 primase homolog protein isoform X21.3e-8690.17Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MISQETL RNVVMQ+ GRQVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGT K LYGIDDI+D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        T+P IEKD+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  +RFKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
A0A5A7TYR4 Twinkle-like protein4.3e-8789.33Show/hide
Query:  MISQETLARNVVMQIAGR-QVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVST
        MISQETL RNVVMQ+ GR QVAIAFTYRQNGQLVGCKYRT+DKRFWQEKGT K LYGIDDI+D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVST
Subjt:  MISQETLARNVVMQIAGR-QVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVST

Query:  DTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVAFLL
        DT+P IEKD+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  +RFKDANEV FLL
Subjt:  DTVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVAFLL
A0A6J1CL89 primase homolog protein isoform X36.3e-8690.23Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MI QETL RN VMQIAGRQ  IAFTYRQNGQL+GCKYRT+DKRFWQEKGTEKLLYGIDDI+D DE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        +V PSIEKDTAYQYLWSCKDYLDKVS IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD +RFKDANE+
Subjt:  TV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
A0A6J1CNI0 primase homolog protein isoform X16.3e-8690.23Show/hide
Query:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        MI QETL RN VMQIAGRQ  IAFTYRQNGQL+GCKYRT+DKRFWQEKGTEKLLYGIDDI+D DE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD
Subjt:  MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
        +V PSIEKDTAYQYLWSCKDYLDKVS IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD +RFKDANE+
Subjt:  TV-PSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
SwissProt top hitse value%identityAlignment
B5X582 Twinkle homolog protein, chloroplastic/mitochondrial2.3e-6163.58Show/hide
Query:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        IS++TL RN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T ++LYG+DDI  T E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+ 
Subjt:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
         +PS +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K +   FKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
F4I6E6 Primase homolog protein1.3e-5963.01Show/hide
Query:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        IS +TL RN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG+DDI +T E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+ 
Subjt:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
         +PS  KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K +   FKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
Arabidopsis top hitse value%identityAlignment
AT1G30660.1 nucleic acid binding;nucleic acid binding9.0e-6163.01Show/hide
Query:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        IS +TL RN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K+LYG+DDI +T E+IIVEGE DKL++EEAGF NC+SVP GAP  VS+ 
Subjt:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
         +PS  KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K +   FKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
AT1G30680.1 toprim domain-containing protein1.6e-6263.58Show/hide
Query:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD
        IS++TL RN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T ++LYG+DDI  T E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+ 
Subjt:  ISQETLARNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTD

Query:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV
         +PS +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K +   FKDANEV
Subjt:  TVPSIEKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCCCAAGAAACTCTAGCAAGGAATGTTGTTATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTACTTACAGACAAAATGGACAGCTCGTCGGTTGC
AAGTACCGAACCATAGACAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAATTATTATATGGGATTGATGACATTAGTGATACAGATGAACTTATCATTGTTGAA
GGCGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTTCTCAATTGTATCAGTGTTCCTGGTGGTGCCCCAAACAAGGTTTCAACTGATACAGTTCCATCAATT
GAAAAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTACTTAGATAAGGTTTCCCGCATAATCTTGGCTACTGATAGTGATGAACCAGGACAAGCTTTG
GCAGAAGAGCTAGCACGTCGCCTTGGAAAACACAGATGTTGGCGGGTAGATTGGCCGTATAAAGATGACGTCAGTCGTTTTAAAGATGCCAATGAGGTTGCCTTC
CTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATCCCAAGAAACTCTAGCAAGGAATGTTGTTATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTACTTACAGACAAAATGGACAGCTCGTCGGTTGC
AAGTACCGAACCATAGACAAGAGATTTTGGCAGGAGAAGGGTACAGAAAAATTATTATATGGGATTGATGACATTAGTGATACAGATGAACTTATCATTGTTGAA
GGCGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTTCTCAATTGTATCAGTGTTCCTGGTGGTGCCCCAAACAAGGTTTCAACTGATACAGTTCCATCAATT
GAAAAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTACTTAGATAAGGTTTCCCGCATAATCTTGGCTACTGATAGTGATGAACCAGGACAAGCTTTG
GCAGAAGAGCTAGCACGTCGCCTTGGAAAACACAGATGTTGGCGGGTAGATTGGCCGTATAAAGATGACGTCAGTCGTTTTAAAGATGCCAATGAGGTTGCCTTC
CTTCTTTGA
Protein sequenceShow/hide protein sequence
MISQETLARNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDKRFWQEKGTEKLLYGIDDISDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSI
EKDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDVSRFKDANEVAFLL