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Lag0025315 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0025315
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr10:11211571..11212749
RNA-Seq ExpressionLag0025315
SyntenyLag0025315
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]3.8e-2355.93Show/hide
Query:  TNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVND
        TN  YE   +   +      VINATLS EALAY+VG    K+ W+ L K +S+ +RSN+VNLK+DLQ+I KK DE +D+YIKRIKEIKDKL  VS+ +N+
Subjt:  TNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVND

Query:  EDCLIYALNGLPYRIQHF
        ED LIYALNGLP     F
Subjt:  EDCLIYALNGLPYRIQHF

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2552.21Show/hide
Query:  MRSKRYLGNLKPPGPDGITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIK
        +++ +  G +    P  I+N  Y+   +   +      VINATLS EALAY+VG    K+ W  L K +S+S+RSN+VNLK+DLQ+I+KK+DE +D+YIK
Subjt:  MRSKRYLGNLKPPGPDGITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIK

Query:  RIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF
        RIKEIKDKL  VS+VVNDED LIYALNGLP     F
Subjt:  RIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-2552.21Show/hide
Query:  MRSKRYLGNLKPPGPDGITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIK
        +++ +  G +    P  I+N  Y+   +   +      VINATLS EALAY+VG    K+ W  L K +S+S+RSN+VNLK+DLQ+I+KK+DE +D+YIK
Subjt:  MRSKRYLGNLKPPGPDGITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIK

Query:  RIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF
        RIKEIKDKL  VS+VVNDED LIYALNGLP     F
Subjt:  RIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]3.8e-2355.93Show/hide
Query:  TNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVND
        TN  YE   +   +      VINATLS EALAY+VG    K+ W+ L K +S+ +RSN+VNLK+DLQ+I KK DE +D+YIKRIKEIKDKL  VS+ +N+
Subjt:  TNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVND

Query:  EDCLIYALNGLPYRIQHF
        ED LIYALNGLP     F
Subjt:  EDCLIYALNGLPYRIQHF

XP_022157455.1 uncharacterized protein LOC111024149 [Momordica charantia]1.7e-2366.3Show/hide
Query:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLP
        +INATLS  A AY+VG    KE W+TLEKH+S+S+R+N+VNLK+DLQSI+KK  E +D Y+KRIKE+KDKL  VS VV+DED LIY LNGLP
Subjt:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLP

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X24.1e-2363.27Show/hide
Query:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF
        VINATLS EALAY+VG    K+ W+ L K +S+ +RSN+VNLK+DLQ+I KK DE +D+YIKRIKEIKDKL  VS+ +N+ED LIYALNGLP     F
Subjt:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X14.1e-2363.27Show/hide
Query:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF
        VINATLS EALAY+VG    K+ W+ L K +S+ +RSN+VNLK+DLQ+I KK DE +D+YIKRIKEIKDKL  VS+ +N+ED LIYALNGLP     F
Subjt:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF

A0A5D3CLI6 T4.54.1e-2363.27Show/hide
Query:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF
        VINATLS EALAY+VG    K+ W+ L K +S+ +RSN+VNLK+DLQ+I KK DE +D+YIKRIKEIKDKL  VS+ +N+ED LIYALNGLP     F
Subjt:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLPYRIQHF

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein2.4e-2352.94Show/hide
Query:  ITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVGCYFKEE-WETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVN
        I+N  YE   +   +  F   +INATLS EAL Y+VGC    + W+TLE+H+S++TR+NIVNLK+DLQ I+KK DE +  YIK+IKE+KDKL   +++V 
Subjt:  ITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVGCYFKEE-WETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVN

Query:  DEDCLIYALNGLPYRIQHF
        DED +IYALNGLP     F
Subjt:  DEDCLIYALNGLPYRIQHF

A0A6J1DT57 uncharacterized protein LOC1110241498.2e-2466.3Show/hide
Query:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLP
        +INATLS  A AY+VG    KE W+TLEKH+S+S+R+N+VNLK+DLQSI+KK  E +D Y+KRIKE+KDKL  VS VV+DED LIY LNGLP
Subjt:  VINATLSSEALAYIVG-CYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVTVSSVVNDEDCLIYALNGLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCCAAAAGGTATCTTGGGAATTTGAAGCCTCCAGGCCCAGATGGAATTACCAACGAGTTTTATGAAAAGACTTGCTCCACTGGAGACTCTTCTTGTTTCTGCTT
CGTCGTCATCAATGCTACATTATCTTCGGAAGCCTTGGCTTACATTGTTGGCTGTTATTTTAAGGAGGAATGGGAAACCCTAGAGAAACATCACTCGACTTCCACTCGGT
CGAATATTGTTAATCTCAAGACCGATCTACAATCAATCACAAAGAAGGCTGATGAACTTGTTGATTCCTACATTAAGCGAATCAAGGAGATCAAGGATAAACTTGTGACT
GTTTCCTCCGTTGTCAATGATGAGGATTGCTTGATCTACGCTCTTAATGGTCTGCCCTATAGAATACAACACTTTTCGTACATCTATGCATACTCGTTCTCAGTCGGTTA
CATTTGTCGAACTCCATGTTCTACTCAAAGCAGAGGAGTCTGCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCCAAAAGGTATCTTGGGAATTTGAAGCCTCCAGGCCCAGATGGAATTACCAACGAGTTTTATGAAAAGACTTGCTCCACTGGAGACTCTTCTTGTTTCTGCTT
CGTCGTCATCAATGCTACATTATCTTCGGAAGCCTTGGCTTACATTGTTGGCTGTTATTTTAAGGAGGAATGGGAAACCCTAGAGAAACATCACTCGACTTCCACTCGGT
CGAATATTGTTAATCTCAAGACCGATCTACAATCAATCACAAAGAAGGCTGATGAACTTGTTGATTCCTACATTAAGCGAATCAAGGAGATCAAGGATAAACTTGTGACT
GTTTCCTCCGTTGTCAATGATGAGGATTGCTTGATCTACGCTCTTAATGGTCTGCCCTATAGAATACAACACTTTTCGTACATCTATGCATACTCGTTCTCAGTCGGTTA
CATTTGTCGAACTCCATGTTCTACTCAAAGCAGAGGAGTCTGCTCATGA
Protein sequenceShow/hide protein sequence
MRSKRYLGNLKPPGPDGITNEFYEKTCSTGDSSCFCFVVINATLSSEALAYIVGCYFKEEWETLEKHHSTSTRSNIVNLKTDLQSITKKADELVDSYIKRIKEIKDKLVT
VSSVVNDEDCLIYALNGLPYRIQHFSYIYAYSFSVGYICRTPCSTQSRGVCS